Releases: c3g/freezeman
Releases · c3g/freezeman
Version 4.11.2
Version 4.11.1
- Fixed a crash when exporting samples with no project.
Version 4.11.0
- Added an mechanism to allow queueing samples to study workflows from the Project associated samples list.
- Created a new workflow action that allow samples to remain on a workflow step while their child move on to the next step.
- Filter experiment list by run_types and by progression in their processing allowing for a simpler view.
- Sample submission template now create generic individual for samples that declare a taxon in the template.
- Default Reference genomes are used for "Homo sapiens" and "Mus musculus" if none are declared in the sample submission template.
- Added of a filter to allow validation emails to be sent by Triton.
- Added Released_by and Validated_by fields to the readset model.
- Container kind was added to the run info file json.
- Projects now have their external_project_id listed.
- Sample kind SERUM added to the sample submission template.
- Fixed an issue with filtering by cohort in the Project section associated samples tab.
- Prevented empty string being inserted as external_project_id in the database.
- Fixed an issue with tooltips being cut short on read set count graphs under some conditions.
Version 4.10.1
- Fix an issue with the ordering of the destination samples during placement.
Version 4.10.0
- Move the project from derivedsample model to derivedbysample model. This allow for sample moved using Transfer to be changed project without waiting for a step that create a new derivedsample.
- Addition of a Project and Study optional columns on the Transfer Template in order to allow changing project at the same time as doing a transfer.
- Add a button to download the run samplesheet during experiment step placement.
- Remove the unique identifier from the destination container barcode when doing pooling planning.
- Remove the numeric part from the destination container barcode of the robot file generated during the pooling planning.
- Project with long names get ellipsed in the middle in the run validation comment box.
- Display samples Project in the placement tables and adjust ordering to take it into account.
- Display source container only when pertinent on the placement table destination side.
- Prevent users from being able to restart an experiment run by themselves (allowed for staff).
- Produce a file mapping containers to the files produced when doing a pooling planning.
Version 4.9.1
Fix Placement (#798) (#801) * set default placement type to pattern * change sorting for placement samples table * more tweaks * fix sorting * reverse comparison * default to column direction * correct comment * allow wrap around * use reverse of offsets only * use enum index
Version 4.9.0
- Rework Labwork Placement
- rework samples, selections and placement tab
- Remove the drop down for planning template for the step Normalization and pooling (Experiment Run) using "needs_planning" step attribute.
- Replace the tubes_without_parent faked container in the labwork step summary endpoint to return an invalid container name instead.
- Add column on Dataset tab and menu for "Validated" runs
- Remove warining when passing runs
- Normalization Pooling Capture
- Curation for Pooling Capture
- [BUG] When opening sample details for a library when comming from somewhere else than the libray listing, the library details are missing.
- On the placement tab, remove the Save for Prefill button (automatically save).
- LAB: Find solution to sort external location on sample export
- The more samples per plate are selected, the longer the selection
- [BUG] LAB: Sorting on QC Flag not working on Axiom workflow link
- LAB: Template Axiom Experiment Submission. To prefilled the "Experiment Container Barcode"
- LAB: Template Axiom Sample Preparation. To add time instructions on column
- LAB: Axiom Sample prep step. To have a prefilled template with the name and the container barcode
- [BUG] LAB: Not able to select more than 672 samples in Axiom Sample Preparation
Version 4.8.0
- Added to Sample Normalization planning template a column that allows users to prevent a row (sample) from being included in the .csv robot file.
- Added to Sample Normalization planning template a column that allows users to add manually controls as diluent during normalization. The volume listed in the column is removed from the .csv robot file diluent amount.
- Axiom folder creation step now export the copy-paste file with double-quotes (") around text fields to prevent excel from reading numeric barcodes as numbers and represent them in scientific notation.
- Labwork step placement tab can now do placement from/into various container kinds (does not include tube for destination).
- Placement tab was added to the experiment run steps.
- Placement tab saw a number of QoL upgrades. Notably users can now select a full row/column, select all sample in a container, click outside cells to deactivate selection, and other smaller changes.
- Indicate the number of samples selected in a group of the labwork step section samples tab.
- Refactor the study page of the project section to load samples on demand only (greatly improved load time).
- Added a comment box for the dataset validation page and a comment timeline on the dataset listing.
- Improved the speed of the library summary endpoint.
- Improved the speed of the labwork step summary endpoint.
- Provide a link from the dataset number of read graph to the last library before pooling.
- Changed the Illumina Experiment Template to make some fields optional, move some fields around, allow Lane to be designated numerically, and allow flowcells side to be deignated by a single letter (A or B).
- Extend formulas in QC templates to a 1000 rows.
- Temporarily prevent users from submitting more than 576 samples.
Version 4.7.0
- Major Labwork Step rework. The sample tab now allows for a break down of samples by Project, Container, Date or User. A new Placement tab was added that can be used to prefill the destination container barcode and destination container coordinates of the templates.
- Splitted the Normalization planning template column "Robot Norm Choice" into a Type and a Robot column. This allows the prefilling of the type using the Workflow information.
- Detects and warns when users inadvertently insert data into cell outside the typical area of a template.
- Removed warning when not entering a choice in the Workflow Action column.
- Creates a file for starting an Axiom Eperiment run during the Axiom Create Folders step. Container barcode is stored in plate comment.
- Added a validation to the Quality Control - Integration (Spark) step to make sure the samples in the file were on the current step.
- Created 2 different experiment containers for Axiom (PMRA and UKBB).
- Created a NovaSeq X instrument, instrument type and experiment containers (flowcells) definitions.
- Fixed a number of issues with the incoming json file format when ingesting after run processing.
- Fixed an issue with selection reverting to previous state when ticking boxes.
- Fixed an issue that was breaking the grouping of steps by platform in the labwork summary Library preparation protocol section.
- Adapted the Qc Flag display to take into account the new partial QC flags.
- Fixed a formula error in Sample Pooling template.
- Added a dropdown to the Destination Container Coordinates in the Normalization planning template.
- Added a dropdown to Infinium Experiment Run template for the Instrument.
- Updated name of labtechs in templates.
Version 4.6.1
- Modified the migration file so it would correctly add the sample field to the pre-existing StepHistory records.