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Releases: broadinstitute/single_cell_portal_core

1.84.0

31 Oct 14:47
fa3e063
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Added

  • Gene name search for CELLxGENE AnnData, via Ingest Pipeline 1.37.0 (#2163)

Changed

  • Bump rexml from 3.3.6 to 3.3.9 (#2162)

1.83.0

23 Oct 20:02
aadcebe
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Added

  • Enable canvas recording for Sentry replays (#2151)
  • High-level metadata preview in search results (#2155)
  • Automatic retries of OOM failures for ingest processes (#2154)
  • Update to Ingest 1.36.1, coerce AnnData boolean metadata to categorical annotations (#2161)

Changed

Fixed

  • Prevent raw counts requirement enforcement when deleting files (#2156)
  • Remove unused name-as-id method (#2157)
  • Restore cell filtering panel for IGV / ATAC multiome (#2158)

1.82.0

09 Oct 15:57
af2e02d
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Added

  • Instant validation for only-alphanumeric-underscore headers (#2143)

Changed

  • Dynamically hide cell filtering panel when not applicable (#2148)

Fixed

  • Address race condition in reporting ingestSummary events to Mixpanel (#2144)
  • Validation error when gzipped file lacks proper extension (#2145)
  • Don't create default cluster fragment for reference AnnData files (#2150)
  • Ignore unsynced directories in bulk download (#2149)

1.81.0

30 Sep 17:39
5feb742
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Added

  • Enable remote CSFV bypass (#2146)

Changed

  • Omit .gz check for RDS files (#2146)

1.80.0

25 Sep 16:39
175b1d4
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Added

  • Spinner for remote file validation, more responsive timing (#2133)
  • Fast ontology validation for AnnData (#2129)
  • Reusable component for adding styled links to home page (#2140)

Changed

  • Create default cluster for AnnData upload unless specified (#2127)
  • Bump vite from 4.5.3 to 4.5.5 #2131

Fixed

  • Handle missing cluster-based annotation in plot data cache (#2128)
  • Ensure email on failure of DE compute or other "special actions" (#2130)
  • Clear cached files when using Replace feature in CSFV (#2135)
  • Handle nil file size in download link (#2134)
  • Restore form updates in AnnData upload UX (#2132)

1.79.0

11 Sep 16:38
699d208
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Added

  • Fast validation for remote AnnData headers (#2118)
  • Fast validation for AnnData rows (#2122)

Changed

  • Add machineType, action, and exitCode to ingestSummary Mixpanel event (#2120)
  • Refine machine type scaling for AnnData files during extract, differential expression (#2123)

Fixed

  • Ignore differential expression jobs when reporting ingestSummary event for AnnData files (#2119)
  • Prevent orphaned data during AnnData ingest when single extraction parse fails (#2121)
  • Only extract raw counts data from AnnData when specified (#2121)
  • Fix upload on non-visualizable files in AnnData UX (#2125)

1.78.0

28 Aug 14:15
6fc9124
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Added

  • Instant header validation for local AnnData files (#2112)
  • Pathway diagrams via related genes ideogram (#2104)
  • Automated differential expression calculation for AnnData files (#2116)

Changed

  • UX refinements for AnnData upload (#2111)
  • Bump rexml from 3.3.3 to 3.3.6 (#2115)

1.77.1

15 Aug 17:58
3a0d9a2
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Changed

  • Renamed release branch to main (#2107)
  • Updated metadata explainer image for AnnData upload (#2108)

Fixed

  • Fix setting tab parameter for analytics (#2106)
  • Fix expression scatter plot upon legend filter (#2109)

1.77.0

14 Aug 15:45
0bcbab2
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Added

  • Analytics logging to indicate whether study is public (#2100)

Changed

  • Enable subsampling of AnnData files (#2102)

Fixed

  • Legend filter for labels with commas (#2099)
  • Don't clobber parse_status when updating AnnData files (#2095)
  • Hide Terra profile warning in public studies (#2100)

1.76.3

01 Aug 19:07
861727e
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Fixed

  • Disable CSFV for miscellaneous file types using "bucket path" option (#2096)