Allow ignoring extra gmail periods (SCP-5219) #1809
Workflow file for this run
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| name: SCP Continuous Integration | |
| on: | |
| push: | |
| branches: | |
| - development | |
| - master | |
| pull_request: | |
| env: | |
| DOCKER_IMAGE_NAME: "gcr.io/broad-singlecellportal-staging/single-cell-portal" | |
| jobs: | |
| Run-All-Tests: | |
| runs-on: self-hosted | |
| steps: | |
| - name: Check out repository code | |
| uses: actions/checkout@v2 | |
| - name: Install vault | |
| run: | | |
| sudo apt-get update && sudo apt-get -y install curl unzip jq | |
| sudo curl -O https://releases.hashicorp.com/vault/1.9.0/vault_1.9.0_linux_amd64.zip | |
| sudo unzip vault_1.9.0_linux_amd64.zip | |
| sudo mv vault /usr/local/bin | |
| - name: Detect changes to Dockerfile | |
| id: changed-dockerfile | |
| uses: tj-actions/[email protected] | |
| with: | |
| files: Dockerfile | |
| - name: Rebuild local image if Dockerfile changed | |
| if: steps.changed-dockerfile.outputs.any_changed == 'true' | |
| run: | | |
| # the previous step uses the changed-files action to detect if the Dockerfile has any updates | |
| # this will require rebuilding the image locally as the downstream "test" image will fail otherwise | |
| # see https://github.com/marketplace/actions/changed-files for more info on this action | |
| echo "#### CHANGES DETECTED TO DOCKERFILE, REBUILDING IMAGE LOCALLY ####" | |
| docker build -t $DOCKER_IMAGE_NAME:development -f Dockerfile . | |
| - name: Load secrets and run tests | |
| env: | |
| VAULT_ADDR: ${{ secrets.VAULT_ADDR }} | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| RAILS_LOG_TO_STDOUT: true | |
| VAULT_ROLE_ID: ${{ secrets.VAULT_ROLE_ID }} | |
| VAULT_SECRET_ID: ${{ secrets.VAULT_SECRET_ID }} | |
| CI: true | |
| run: | | |
| export VAULT_TOKEN=$( vault write -field=token auth/approle/login role_id=$VAULT_ROLE_ID secret_id=$VAULT_SECRET_ID ) | |
| # The "broad-singlecellportal-staging" GCR repository is used in production. | |
| # The "development" tag is used in non-production deployment. For production deployment, tag is version number for | |
| # upcoming release, e.g. 1.20.0. | |
| # More context: https://github.com/broadinstitute/single_cell_portal_core/pull/1552#discussion_r910424433 | |
| # TODO: (SCP-4496): Move production-related GCR images out of staging project | |
| # add ci- prefix to avoid post-merge build failing due to missing GITHUB_HEAD_REF | |
| # and strip any slashes from GITHUB_HEAD_REF to avoid 'invalid reference format' error with tag | |
| # this will happen on dependabot PRs | |
| SAFE_HEAD_REF=$(echo $GITHUB_HEAD_REF | sed -e 's/\//_/g') | |
| DOCKER_IMAGE_TAG="ci-$SAFE_HEAD_REF-$GITHUB_SHA" | |
| docker build -t $DOCKER_IMAGE_NAME:$DOCKER_IMAGE_TAG -f test/Dockerfile-test . | |
| bin/load_env_secrets.sh -p secret/kdux/scp/staging/scp_config.json \ | |
| -s secret/kdux/scp/staging/scp_service_account.json \ | |
| -r secret/kdux/scp/staging/read_only_service_account.json \ | |
| -e test -v $DOCKER_IMAGE_TAG \ | |
| -n single-cell-portal-test | |
| - name: Preserve all test logs | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: test-logs | |
| path: | | |
| log/test.log | |
| log/delayed_job.test.log |