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Repartition gene model release tables #1672

Merged
merged 4 commits into from
Jan 15, 2025
Merged

Repartition gene model release tables #1672

merged 4 commits into from
Jan 15, 2025

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rileyhgrant
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@rileyhgrant rileyhgrant commented Jan 14, 2025 •
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Resolves #1643

  • Minor update to gene pipeline task to change amount of partitions the gene model tables get reduced as part of preparing the public release table
  • Updates downloads page to point to the new paths
  • Updates the help text to include the GTEx/pext information now included in the public release gene model hail tables
  • Updates note on gene page to be more specific about what variants are displayed

@rileyhgrant rileyhgrant self-assigned this Jan 14, 2025
@rileyhgrant rileyhgrant mentioned this pull request Jan 14, 2025
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@rileyhgrant rileyhgrant changed the title Reparition gene model release tables Repartition gene model release tables Jan 14, 2025
@rileyhgrant rileyhgrant requested a review from ch-kr January 15, 2025 21:12
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ch-kr approved these changes Jan 15, 2025
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I only looked at the help text md -- a couple of minor edits but otherwise LGTM!

browser/help/topics/v4-browser-hts.md Outdated Show resolved Hide resolved
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@rileyhgrant
feat(data-pipeline): repartition gene tables
d47431a
@rileyhgrant
feat(data-pipeline): update Download links
35a262a
@rileyhgrant
feat(browser): update browser gene model help text
0d211c7
@rileyhgrant
feat(browser): update gene page variant note
846558c 
Update the warning/note on the gene page to explicitly state that the
valid coding exons that define the padded regions to display variants
for the gene only includes CDS exons, not UTRs.

Clarifies the text in the case of genes with only non-coding transcripts.
@rileyhgrant rileyhgrant force-pushed the update-gene-partitions branch from 0936938 to 846558c Compare January 15, 2025 21:32
@rileyhgrant rileyhgrant merged commit 253cc0b into main Jan 15, 2025
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@rileyhgrant rileyhgrant deleted the update-gene-partitions branch January 15, 2025 22:07
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@phildarnowsky-broad phildarnowsky-broad phildarnowsky-broad approved these changes

@ch-kr ch-kr ch-kr approved these changes

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Repartition browser gene model release Hail Tables
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@rileyhgrant @ch-kr @phildarnowsky-broad