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Add SSSOM and RDF outputs #29

Merged
merged 1 commit into from
Jan 8, 2025
Merged

Add SSSOM and RDF outputs #29

merged 1 commit into from
Jan 8, 2025

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cthoyt
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@cthoyt cthoyt commented Jan 7, 2025

This PR adds two new output formats:

Format File Description
SSSOM tiwid.sssom.tsv An output in the Simple Standard for Sharing Ontological Mappings (SSSOM) format
RDF tiwid.ttl An output in RDF, serialized with Turtle. This file can be readily converted to an OWL ontology with ROBOT with robot convert -i tiwid.ttl -o tiwid.owl.

It also makes minor updates to the README, such as noting that the data is standardized on Bioregistry and not Identifiers.org (though, effectively this is the same thing)

@cthoyt cthoyt requested a review from egonw January 7, 2025 14:33
@egonw
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egonw commented Jan 8, 2025

Thanks, great idea!

@egonw egonw merged commit 8fbee9a into main Jan 8, 2025
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@cthoyt cthoyt deleted the more-outputs branch January 8, 2025 11:03
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2 participants