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@blahah blahah released this 07 Jul 14:56
· 53 commits to master since this release
v1.0.1
632265d

screenshot 2014-10-17 11 22 27

transrate v1.0.1

This is the final release of transrate v1. This our first stable production release. Please report any bugs on the issue tracker. Documentation for this release is on the transrate website: http://hibberdlab.com/transrate/.

Installation

Simple install

This is the simplest option if you just want to use transrate from the command-line...

Download one of the binaries linked below, unpack it, and add it to your PATH.

Download the example data so you can test your installation has worked.

Advanced/developer install

This is the option you need if you want to develop code that uses transrate as a library...

$ gem install transrate
$ transrate --install-deps

Changes

  • fixed an issue where providing multiple assemblies would break reference-based mode
  • refactored the command-line so that all CLI code can be unit tested
  • tidied up command-line output so that a neat directory structure is created
  • the colourful banner is now only shown when the terminal is wide enough
  • the packaged binary version no longer lists the option to install read dependencies, as they are pre-packaged
  • made error message more helpful for the case where Trinity's FASTA headers cause problems
  • documented the ability to take multiple FASTQ files in the CLI --help
  • all SNAP logs (stdout and stderr) are now saved to the logs directory

For changelog history before v1.0.0, please see the release notes for v1.0.0 final.

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