v1.0.0 alpha 3

transrate v1.0.0 alpha 3

This is the third alpha release of transrate v1.

To install:

$ gem install --pre transrate --version 1.0.0.alpha3
$ transrate --install-deps

If you are updating from a version below v1, please see the release notes for v1.0.0.alpha1.

Changelog

Some minor changes and bug-fixes:

• avoid re-running stages of the read-processing if their output files already exist
• add timestamp to logger #94
• print help message when transrate is run with no arguments #93
• transrate now reports the version number for missing dependencies
• fix samtools sort threads argument #96
• help message updated to include transrate score example and both authors
• updated coverage calculation
• fix a segfault in bam-read (cboursnell/transrate-tools@8fec0e9, #98)