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Chunlei Wu edited this page Apr 27, 2014
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Welcome to the myvariant.info wiki!
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Get a variant from a ID:
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Making queries (query syntax):
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query for anything
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{
"_id": <variant_id>,
"attr1": <value_1>,
"attr2": <value_2>
...
}
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<variant_id> should follow HGVS standard.
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a real example:
{ '_id': u'chr1:g.35366C>T', 'allele1': u'C', 'allele2': u'T', 'chrom': u'chr1', 'chromEnd': 35367, 'chromStart': 35366, 'func': u'unknown', 'rsid': u'rs71409357', 'snpclass': u'single', 'strand': u'-' }
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MyGene.info
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MyGene.info repos
- https://bitbucket.org/sulab/mygene.hub/src (backend)
- https://bitbucket.org/sulab/mygene.info/src (frontend)
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mutdb (Mooney lab)
- missense mutations from COSMIC, UniProt, dbSNP
- (Sean will send dumps, maybe expose an API)