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Update README.md
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zmgong authored Aug 7, 2024
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Expand Up @@ -86,12 +86,11 @@ mkdir -p data/BIOSCAN_5M/split_data
cd data/BIOSCAN_5M
wget https://aspis.cmpt.sfu.ca/projects/bioscan/BIOSCAN_CLIP_for_downloading/BIOSCAN_5M.hdf5
```
### Download data for generating hdf5 files
For more information about the hdf5 files, please check [Link](https://github.com/3dlg-hcvc/bioscan-clip/blob/main/DATA.md)

TODO: provide instructions on how to generate hdf5 files and explain what input is needed to generate the hdf5 files.
TODO: add the command for downloading the images and generating the hdf5 file.
### Download data for generating hdf5 files

You can check [BIOSCAN-1M](https://github.com/zahrag/BIOSCAN-1M) and [BIOSCAN-5M](https://github.com/zahrag/BIOSCAN-5M) to download tsv files.
You can check [BIOSCAN-1M](https://github.com/zahrag/BIOSCAN-1M) and [BIOSCAN-5M](https://github.com/zahrag/BIOSCAN-5M) to download tsv files. But they are actually not necessary.

# Running experiments
We recommend the use of [weights and biases](https://wandb.ai/site) to track and log experiments
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