Fix formatting

bioinformatics-core-shared-training · Oct 31, 2024 · 3565e25 · 3565e25
1 parent 429b1b3
commit 3565e25
Showing 1 changed file with 10 additions and 7 deletions.
diff --git a/Full_Course_Index.md b/Full_Course_Index.md
@@ -30,8 +30,8 @@ differential expression analysis of RNA-seq data.
 * Session 1 - [Introduction to RNAseq Methods](Markdowns/01_Introduction_to_RNAseq_Methods.html)
 
 
-* Session 2 - [Raw read file format and QC](Markdowns/02_FastQC_introduction.html)
-        - [Practical](Markdowns/02_FastQC_practical.html)
+* Session 2 - [Raw read file format and QC](Markdowns/02_FastQC_introduction.html)  
+        - [Practical](Markdowns/02_FastQC_practical.html)  
         - [Practical solutions](Markdowns/02_FastQC_solutions.html)
 
 * Session 3 - [Alignment and Quantification of Gene Expression with Salmon](Markdowns/03_Quantification_with_Salmon_introduction.html)   
@@ -49,25 +49,28 @@ differential expression analysis of RNA-seq data.
   - [Practical solutions](Markdowns/05_Data_Exploration_solutions.html) ([pdf](Markdowns/05_Data_Exploration_solutions.pdf))   
 
 
-* Session 6 - Statistical analysis of RNAseq data in R
-  - [Introduction to RNAseq Analysis in R](Markdowns/06_Introduction_to_RNAseq_Analysis_in_R.html)  
+* Session 6 - [Introduction to RNAseq Analysis in R](Markdowns/06_Introduction_to_RNAseq_Analysis_in_R.html)  
+
+* Session 7 - Statistical analysis of RNAseq data
   - [Statistical Analysis of Bulk RNAseq Data](additional_scripts_and_materials/RNA-seq_stats.pdf)  
   - [Linear Models in R and DESeq2 (Slides)](additional_scripts_and_materials/Statistical_models_in_R_DESeq2.pdf)    
   - [Linear Models in R and DESeq2 (Worksheet)](Markdowns/07_Linear_Models.html) ([pdf](Markdowns/07_Linear_Models.pdf))  
+
+* Session 8 - Differential Expression Analysis with DESeq2
   - [Practical - Differential Expression for RNA-seq](Markdowns/08_DE_analysis_with_DESeq2.html) ([pdf](Markdowns/08_DE_analysis_with_DESeq2.pdf))      
   - [practical solutions](Markdowns/08_DE_analysis_with_DESeq2_solutions.html) ([pdf](Markdowns/08_DE_analysis_with_DESeq2_solutions.pdf))    
   - [DESeq2 results extraction cheatsheet](additional_scripts_and_materials/DESeq2_results_cheatsheet.pdf)
   - [extra models plots](additional_scripts_and_materials/Expl_all.pdf)
 
 
-* Session 7 - [Annotation of RNA-seq results](Markdowns/09_Annotation.html)
+* Session 9 - [Annotation of RNA-seq results](Markdowns/09_Annotation.html)
   - [Practical](Markdowns/09_Annotation_and_Visualisation.html) ([pdf](Markdowns/09_Annotation_and_Visualisation.pdf))
   - [Practical solutions](Markdowns/09_Annotation_and_Visualisation_Solutions.html) ([pdf](Markdowns/09_Annotation_and_Visualisation_Solutions.pdf))
 
-* Session 8 - [Visualisation differential expression results](Markdowns/10_Data_Visualisation.html)     
+* Session 10 - [Visualisation differential expression results](Markdowns/10_Data_Visualisation.html)     
   - [practical solutions](Markdowns/10_Data_Visualisation_solutions.html)   
 
-* Session 9 - [Gene-set testing](Markdowns/11_Gene_set_testing_introduction.html)
+* Session 11 - [Gene-set testing](Markdowns/11_Gene_set_testing_introduction.html)
    - [Practical (html)](Markdowns/11_Gene_set_testing.html) [(pdf)](Markdowns/11_Gene_set_testing.pdf)
    - [Practical solutions (html)](Markdowns/11_Gene_set_testing_solutions.html) (pdf)](Markdowns/11_Gene_set_testing_solutions.pdf)