Remove index merging code from src/htsjdk (disq-bio#121)

* Remove index merging code that was pushed down into htsjdk * Update htsjdk 2.20.3 -> 2.21.0 * Use BAI merge code from htsjdk * Use Tabix merge code from htsjdk * Use VariantContextWriterBuilder from htsjdk that can index streams on the fly * Use StreamBasedTabixIndexCreator from htsjdk * Remove IndexMerger * Use CRAI merge code from htsjdk Co-authored-by: Tom White <[email protected]> Co-authored-by: Louis Bergelson <[email protected]>
biodatageeks · Nov 6, 2019 · 22c5c92 · 22c5c92
1 parent 202e1f0
commit 22c5c92
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diff --git a/pom.xml b/pom.xml
@@ -34,7 +34,7 @@
         <java.version>1.8</java.version>
         <maven.compiler.target>${java.version}</maven.compiler.target>
         <maven.compiler.source>${java.version}</maven.compiler.source>
-        <htsjdk.version>2.20.0</htsjdk.version>
+        <htsjdk.version>2.21.0</htsjdk.version>
         <hadoop.version>2.7.5</hadoop.version>
         <mockito.version>2.22.0</mockito.version>
         <kryo-serializers.version>0.42</kryo-serializers.version>