Updates to version 4.0.6

biobakery · Mar 1, 2023 · 231863f · 231863f
1 parent 31277cc
commit 231863f
Show file tree

Hide file tree

Showing 17 changed files with 36 additions and 30 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -1,3 +1,9 @@
+## Version 4.0.6 (Mar 1st, 2023)
+### Changed features
+* [MetaPhlAn] The GTDB taxonomic assignment for the vOct22 database is now available.
+
+<br/>
+
 ## Version 4.0.5 (Feb 23rd, 2023)
 ### Database updates
 * We just released the new vOct22 database

diff --git a/bioconda_recipe/meta.yaml b/bioconda_recipe/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "metaphlan" %}
-{% set version = "4.0.5" %}
+{% set version = "4.0.6" %}
 
 package:
   name: {{ name }}

diff --git a/metaphlan/metaphlan.py b/metaphlan/metaphlan.py
@@ -4,8 +4,8 @@
               'Nicola Segata ([email protected]), '
               'Duy Tin Truong, '
               'Francesco Asnicar ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 import sys
 try:

diff --git a/metaphlan/strainphlan.py b/metaphlan/strainphlan.py
@@ -4,8 +4,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import argparse as ap

diff --git a/metaphlan/utils/add_metadata_tree.py b/metaphlan/utils/add_metadata_tree.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Duy Tin Truong ([email protected]), '
               'Aitor Blanco Miguez ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 import argparse as ap
 import pandas

diff --git a/metaphlan/utils/consensus_markers.py b/metaphlan/utils/consensus_markers.py
@@ -1,6 +1,6 @@
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 import os
 import pickle

diff --git a/metaphlan/utils/database_controller.py b/metaphlan/utils/database_controller.py
@@ -1,6 +1,6 @@
 __author__ = 'Aitor Blanco Miguez ([email protected])'
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/metaphlan/utils/external_exec.py b/metaphlan/utils/external_exec.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/metaphlan/utils/extract_markers.py b/metaphlan/utils/extract_markers.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Aitor Blanco Miguez ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/metaphlan/utils/parallelisation.py b/metaphlan/utils/parallelisation.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 from typing import Iterable, Callable, Any

diff --git a/metaphlan/utils/phylophlan_controller.py b/metaphlan/utils/phylophlan_controller.py
@@ -1,6 +1,6 @@
 __author__ = 'Aitor Blanco Miguez ([email protected]'
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/metaphlan/utils/plot_tree_graphlan.py b/metaphlan/utils/plot_tree_graphlan.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Duy Tin Truong ([email protected]), '
               'Aitor Blanco Miguez ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 import argparse as ap
 import dendropy

diff --git a/metaphlan/utils/sample2markers.py b/metaphlan/utils/sample2markers.py
@@ -5,8 +5,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 

diff --git a/metaphlan/utils/sgb_to_gtdb_profile.py b/metaphlan/utils/sgb_to_gtdb_profile.py
@@ -1,7 +1,7 @@
 #!/usr/bin/env python
 __author__ = 'Aitor Blanco ([email protected]'
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 import os
 import time

diff --git a/metaphlan/utils/strain_transmission.py b/metaphlan/utils/strain_transmission.py
@@ -1,8 +1,8 @@
 #!/usr/bin/env python
 __author__ = ('Aitor Blanco ([email protected]), '
               'Mireia Valles-Colomer ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/metaphlan/utils/util_fun.py b/metaphlan/utils/util_fun.py
@@ -3,8 +3,8 @@
               'Francesco Asnicar ([email protected]), '
               'Moreno Zolfo ([email protected]), '
               'Francesco Beghini ([email protected])')
-__version__ = '4.0.5'
-__date__ = '23 Feb 2023'
+__version__ = '4.0.6'
+__date__ = '1 Mar 2023'
 
 
 import os

diff --git a/setup.py b/setup.py
@@ -14,7 +14,7 @@
 
 setuptools.setup(
     name='MetaPhlAn',
-    version='4.0.5',
+    version='4.0.6',
     author='Aitor Blanco-Miguez',
     author_email='[email protected]',
     url='http://github.com/biobakery/MetaPhlAn/',