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Updates to version 4.0.6
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abmiguez committed Mar 1, 2023
1 parent 31277cc commit 231863f
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Showing 17 changed files with 36 additions and 30 deletions.
6 changes: 6 additions & 0 deletions CHANGELOG.md
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## Version 4.0.6 (Mar 1st, 2023)
### Changed features
* [MetaPhlAn] The GTDB taxonomic assignment for the vOct22 database is now available.

<br/>

## Version 4.0.5 (Feb 23rd, 2023)
### Database updates
* We just released the new vOct22 database
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2 changes: 1 addition & 1 deletion bioconda_recipe/meta.yaml
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{% set name = "metaphlan" %}
{% set version = "4.0.5" %}
{% set version = "4.0.6" %}

package:
name: {{ name }}
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4 changes: 2 additions & 2 deletions metaphlan/metaphlan.py
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'Nicola Segata ([email protected]), '
'Duy Tin Truong, '
'Francesco Asnicar ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'

import sys
try:
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4 changes: 2 additions & 2 deletions metaphlan/strainphlan.py
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'Francesco Asnicar ([email protected]), '
'Moreno Zolfo ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import argparse as ap
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4 changes: 2 additions & 2 deletions metaphlan/utils/add_metadata_tree.py
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#!/usr/bin/env python
__author__ = ('Duy Tin Truong ([email protected]), '
'Aitor Blanco Miguez ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'

import argparse as ap
import pandas
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4 changes: 2 additions & 2 deletions metaphlan/utils/consensus_markers.py
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__author__ = 'Aitor Blanco Miguez ([email protected])'
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'

import os
import pickle
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4 changes: 2 additions & 2 deletions metaphlan/utils/database_controller.py
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__author__ = 'Aitor Blanco Miguez ([email protected])'
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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4 changes: 2 additions & 2 deletions metaphlan/utils/external_exec.py
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'Francesco Asnicar ([email protected]), '
'Moreno Zolfo ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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4 changes: 2 additions & 2 deletions metaphlan/utils/extract_markers.py
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@@ -1,8 +1,8 @@
#!/usr/bin/env python
__author__ = ('Aitor Blanco Miguez ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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4 changes: 2 additions & 2 deletions metaphlan/utils/parallelisation.py
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'Francesco Asnicar ([email protected]), '
'Moreno Zolfo ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


from typing import Iterable, Callable, Any
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4 changes: 2 additions & 2 deletions metaphlan/utils/phylophlan_controller.py
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__author__ = 'Aitor Blanco Miguez ([email protected]'
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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4 changes: 2 additions & 2 deletions metaphlan/utils/plot_tree_graphlan.py
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@@ -1,8 +1,8 @@
#!/usr/bin/env python
__author__ = ('Duy Tin Truong ([email protected]), '
'Aitor Blanco Miguez ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'

import argparse as ap
import dendropy
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4 changes: 2 additions & 2 deletions metaphlan/utils/sample2markers.py
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'Francesco Asnicar ([email protected]), '
'Moreno Zolfo ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'



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4 changes: 2 additions & 2 deletions metaphlan/utils/sgb_to_gtdb_profile.py
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@@ -1,7 +1,7 @@
#!/usr/bin/env python
__author__ = 'Aitor Blanco ([email protected]'
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'

import os
import time
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4 changes: 2 additions & 2 deletions metaphlan/utils/strain_transmission.py
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@@ -1,8 +1,8 @@
#!/usr/bin/env python
__author__ = ('Aitor Blanco ([email protected]), '
'Mireia Valles-Colomer ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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4 changes: 2 additions & 2 deletions metaphlan/utils/util_fun.py
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'Francesco Asnicar ([email protected]), '
'Moreno Zolfo ([email protected]), '
'Francesco Beghini ([email protected])')
__version__ = '4.0.5'
__date__ = '23 Feb 2023'
__version__ = '4.0.6'
__date__ = '1 Mar 2023'


import os
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2 changes: 1 addition & 1 deletion setup.py
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setuptools.setup(
name='MetaPhlAn',
version='4.0.5',
version='4.0.6',
author='Aitor Blanco-Miguez',
author_email='[email protected]',
url='http://github.com/biobakery/MetaPhlAn/',
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