This repository contains scripts that the Bio Code Group wrote that are used to automate general lab computational tasks.
The main purpose of this repository is to practice programming through projects that provide useful utilities for biological data. While many of these are written in other groups as well, it provides a good starting point for new students to familiarize themselves with biological data and using Python to solve problems or automate tasks.
Utility scripts are written in Python3.
These are standalone scripts and can just be copied & run with python.
git clone https://github.com/biocodegroup/utility-scripts.git
Tests have not yet been created for this repository.
To run file converter:
python <command here>
This is a beginner, educational repository for students learning Python or R to contribute to. We are a small group of students at CSU studying biology and learning code through hands-on activities, please contact a member through the webpage to ask about joining before you contribute to this repository.
- qSeq-FastQ converter
- demultiplex libraries
- Charlotte Cialek - Initial work on file converter - ccialek
- Josh Svendsen - Initial work on file converter - jmsvendsen See also the list of contributors who participated in this project.
This project is licensed under the MIT License - see the LICENSE.md file for details