Dev

[ypriverol]

Summary by CodeRabbit

• Documentation
  • Enhanced README for tissue proteomes project
  • Added comprehensive details about Absolute Expression datasets
  • Included guidelines for dataset selection and organization
  • Documented tissue, plasma, tumor, and cell line experiment categories

[coderabbitai]

Caution

Review failed

The pull request is closed.

Walkthrough

The pull request introduces comprehensive documentation for Absolute Expression datasets in the README-tissues.md file. The new documentation provides a structured overview of protein expression datasets, categorizing them into cell lines, tissues, platelet, and tumor types. It details the selection criteria for datasets, emphasizing the use of healthy tissue samples and Trypsin-derived samples to minimize variability. The documentation offers insights into how samples are aggregated and organized, enhancing the clarity and accessibility of the research resources.

Changes

File	Change Summary
projects/tissue-proteomes/README-tissues.md	Added comprehensive documentation for Absolute Expression datasets, including: - New section on dataset selection criteria - Detailed categorization of datasets (tissues, plasma, tumor, cell lines) - Explanation of factor value aggregation - Listing of specific experimental datasets

Poem

🧬 In labs where proteins dance and sway,
A README blooms, guiding the way
Tissues mapped with scientific might
Each dataset a molecular delight!
🐰 Code Rabbit hops through data's domain 🔬

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📜 Recent review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 0fdfa2d and da7337f.

⛔ Files ignored due to path filters (4)

• projects/cell-lines-proteomes/PXD030406/PXD030406.sdrf.tsv is excluded by !**/*.tsv
• projects/tissue-proteomes/PXD010154/PXD010154.sdrf.tsv is excluded by !**/*.tsv
• projects/tissue-proteomes/PXD010557/PXD010557.sdrf.tsv is excluded by !**/*.tsv
• projects/tissue-proteomes/tissue-mapping-annotation.csv is excluded by !**/*.csv

📒 Files selected for processing (1)

• projects/tissue-proteomes/README-tissues.md (1 hunks)

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