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Refactor py#12

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ypriverol wants to merge 64 commits intodevbigbio/fslite:devfrom refactor-pybigbio/fslite:refactor-pyCopy head branch name to clipboard

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Commits on Sep 19, 2024

• first line

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• first iteration of pandas fdataframe.py

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• first iteration of pandas fdataframe.py

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• first iteration of pandas fdataframe.py

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Commits on Sep 20, 2024

• update fdataframe class

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• minor refactory

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• Merge branch 'refactor-py' of https://github.com/bigbio/fsspark into refactor-py

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• first iteration of pandas fdataframe.py

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• Merge remote-tracking branch 'origin/refactor-py' into refactor-py

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• first iteration of pandas fdataframe.py

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• first iteration of pandas fdataframe.py

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• added test univariate corr

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• refactor univariate methods (corr)

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• update

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• added methods to select features and update FSDataFrame

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• move from unitests to pytests

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• move from unitests to pytests

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Commits on Sep 21, 2024

• minor changes to store sparse matrices

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Commits on Sep 22, 2024

• fsspark -> fslite

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• fsspark -> fslite

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• better structure for methods in constants.py

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• better structure for methods in constants.py

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• fsspark -> fslite

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• Minor changes in constants.py

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• black applied

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• clean more code.

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• clean more code.

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• update in dependencies

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• update in dependencies

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• update in dependencies

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• update in dependencies

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• update in dependencies

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• smaller tests for CI/CD

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Commits on Sep 23, 2024

• smaller tests for CI/CD

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• Another refactoring

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• Another refactoring

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• Another refactoring

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• refactoring ml methods

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• refactoring ml methods

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• added file for experiments

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• minor comments

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• minor refinements

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• minor refinements

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• added example script to parse single-cell data

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• implemented univariate selector methods (from sci-learn) and added tests.

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Commits on Sep 24, 2024

• added implementation for multivariate methods: variance and matrix_correlation

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• added tests for multivariate

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• loom2parquet examples

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Commits on Sep 25, 2024

• Update fslite/fs/utils.py

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• Update fslite/tests/test_ml_methods.py

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• Update fslite/tests/generate_big_tests.py

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• Update fslite/tests/generate_big_tests.py

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• delete ML methods

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• delete ML methods

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• Update examples/loom2parquetmerge.py

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• Update fslite/tests/generate_big_tests.py

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• Update fslite/fs/methods.py

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• Update fslite/fs/ml.py

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• Update fslite/fs/fdataframe.py

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• Update fslite/fs/multivariate.py

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• delete ML methods

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• delete ML methods

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• refactoring parquet SC generation

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Commits on Sep 26, 2024

• small changes

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