Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add resources to readme #19

Open
wants to merge 2 commits into
base: master
Choose a base branch
from
Open

add resources to readme #19

Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
4846271
add manuscripts, presentations, and posters
aryarm Oct 30, 2021
51a662b
update pr link and snakemake version in badge
aryarm Oct 30, 2021
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 12 additions & 1 deletion README.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
[![Snakemake](https://img.shields.io/badge/snakemake-≥5.18.0-brightgreen.svg?style=flat-square)](https://snakemake.bitbucket.io)
[![Snakemake](https://img.shields.io/badge/snakemake-≥5.20.1-brightgreen.svg?style=flat-square)](https://snakemake.bitbucket.io)
[![License](https://img.shields.io/apm/l/vim-mode.svg)](LICENSE)

# flower_map
Expand Down Expand Up @@ -61,3 +61,14 @@ Various scripts used by the pipeline. See the [script README](scripts/README.md)

### [run.bash](run.bash)
An example bash script for executing the pipeline using `snakemake` and `conda`. Any arguments to this script are passed directly to `snakemake`.

# communications
1. [Thesis Manuscript](https://scholar.google.com/citations?view_op=view_citation&hl=en&user=6iMJCn0AAAAJ&citation_for_view=6iMJCn0AAAAJ:u-x6o8ySG0sC)

Check out our manuscript if you're interested in how the method performed on our data.
2. [Socal Animal Behavior Talk](https://drive.google.com/uc?export=download&id=1eRfbXQf6hF5KsSne43bRyd7DVkIsbbmf)

These slides can be helpful if you want a broad overview of how the method works.
3. [ESA Conference Poster](https://drive.google.com/uc?export=download&id=1esQWCZAeV6C7Y5LKXDELlHBEMBmeHaA6)

This poster describes the performance of our method after a major revision to parallelize the segmentation step. See [PR #6](https://github.com/beelabhmc/flower_map/pull/6) for details about the revision.