Besca 2.5

What's Changed

• Bump numpy from 1.21.5 to 1.22.0 in /devtools by @dependabot in #210
• updated setup.py to create pypi packages, updated README.md to install besca from pypi by @yannik-benndorf in #209
• modified setup.py by @paulgeser in #212
• Fix for #166 / refactored subset_data function by @paulgeser in #214
• Add pytest to environment.yml by @paulgeser in #211
• fixed typo / resolve #187 by @paulgeser in #213
• Added width/height to plotting functions by @paulgeser in #216
• GitHub action to deploy besca to PyPI on new release by @yannik-benndorf in #220
• Update _celltype_quantification.py by @hatjek in #198
• Besca issue#3 by @kohleman in #221
• replaced bc.st.regress_out with sc.pp.scale by @kohleman in #222
• 185 bcplupdate qualitative palette is not working proprely by @kohleman in #224
• 197 the r code in function valoutlier needs modification by @kohleman in #225
• #167 added a replace after reading in metadata.tsv by @kohleman in #227
• Bump mistune from 0.8.4 to 2.0.3 in /devtools by @dependabot in #231
• Added check for var_names in citeseq part of sw fixing #149 by @swalpe in #230
• fix bug in bc.pl.dot_heatmap_split by @yannik-benndorf in #233
• Updated Python version by @yannik-benndorf in #235
• Bump nbconvert from 6.4.2 to 6.5.1 in /devtools by @dependabot in #236
• Bug Fix: in commit f6c914a, regress_out was removed and only scaling … by @Accio in #234
• Removed double space in Neutro signature (between FCGR3B and CXCR2) by @llumdi in #232
• Critical Bug fix: in highly_variable_genes by @Accio in #238
• Fix for issue #159 by @paulgeser in #239
• #240 using random anndata to run test by @kohleman in #241
• 12 import functions currently do not check for correct standard formatting by @kohleman in #237
• Fix for issue #100 by @paulgeser in #242
• Changed author in setup.py by @paulgeser in #244
• updated environment.lock.yml by @paulgeser in #245
• 217 omit or replace r functions by @kohleman in #243
• Fix for issue #176 by @paulgeser in #246
• 2.5 dev by @kohleman in #247
• Update standard_workflow_besca2.ipynb by @swalpe in #248
• Modified mtx read function as fix #167 introduced a bug by @swalpe in #249
• Std workflow 2.5 by @hatjek in #250

New Contributors

• @yannik-benndorf made their first contribution in #209

Full Changelog: 2.4.6...2.5