Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Update CellTypes_v1.tsv #316

Merged
merged 1 commit into from
Aug 8, 2023
Merged

Update CellTypes_v1.tsv #316

merged 1 commit into from
Aug 8, 2023

Conversation

hatjek
Copy link
Contributor

@hatjek hatjek commented Aug 7, 2023

  • Changed "gamma delta T cell" (without dash) to the official EFO term "gamma-delta T cell" (with dash, CL:0000798)
  • Changed "pericyte cell" to "pericyte" (CL:0000669).
  • Changed EFO ID for "transit amplifying cell" from DB:0000024 to CL:0009010.
  • Added new cell types for Elmentaite dataset (annotation from celltypist intestine): BEST4+ intestinal epithelial cell, human
    T follicular helper cell
    capillary endothelial cell
    colon macrophage
    endothelial cell of artery
    tuft cell of colon
    vein endothelial cell

@hatjek
Update CellTypes_v1.tsv
fd9b3ab 
- Changed "gamma delta T cell" (without dash) to the official EFO term "gamma-delta T cell" (with dash, CL:0000798)
- Changed "pericyte cell" to "pericyte" (CL:0000669).
- Changed EFO ID for "transit amplifying cell" from DB:0000024 to CL:0009010. 
- Added new cell types for Elmentaite dataset (annotation from celltypist intestine): 
BEST4+ intestinal epithelial cell, human
T follicular helper cell
capillary endothelial cell
colon macrophage
endothelial cell of artery
tuft cell of colon
vein endothelial cell
@hatjek hatjek requested a review from swalpe August 7, 2023 15:24
swalpe
swalpe approved these changes Aug 7, 2023
View reviewed changes
Copy link
Collaborator

@swalpe swalpe left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks great, thanks for the update!

@hatjek hatjek merged commit ea69b8a into master Aug 8, 2023
0 of 2 checks passed
@hatjek hatjek deleted the hatjek-patch-1 branch August 8, 2023 06:21
idavydov pushed a commit to idavydov/besca that referenced this pull request Nov 9, 2023
@hatjek
Merge pull request bedapub#316 from bedapub/hatjek-patch-1
b43c5d0 
Update CellTypes_v1.tsv
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers

@swalpe swalpe swalpe approved these changes

Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.
2 participants
@hatjek @swalpe