Merge pull request #361 from bedapub/sinfo

Sinfo

devtools/requirements.txt

@@ -148,7 +148,7 @@ scvelo==0.2.4
 scvi-tools==0.15.0
 seaborn==0.11.2
 Send2Trash==1.8.0
-sinfo==0.3.4
+session-info==1.0.0
 six==1.16.0
 sortedcontainers==2.4.0
 SQLAlchemy==1.4.31

docs/source/scripts/environment_besca.yml

@@ -222,7 +222,7 @@ dependencies:
     - scvelo==0.2.2
     - seaborn==0.11.0
     - setuptools-scm==4.1.2
-    - sinfo==0.3.1
+    - session-info==1.0.0
     - sortedcontainers==2.2.2
     - statsmodels==0.12.0
     - stdlib-list==0.7.0

docs/source/scripts/environment_besca_test.yml

@@ -132,7 +132,7 @@ dependencies:
     - seaborn==0.11.0
     - send2trash==1.5.0
     - setuptools-scm==4.1.2
-    - sinfo==0.3.1
+    - session-info==1.0.0
     - six==1.15.0
     - sortedcontainers==2.2.2
     - sqlalchemy==1.3.20

environment.lock.yml

@@ -285,7 +285,7 @@ dependencies:
   - seaborn-base=0.11.2=pyhd8ed1ab_0
   - session-info=1.0.0=pyhd8ed1ab_0
   - setuptools=59.5.0=py38h578d9bd_0
-  - sinfo=0.3.1=py_0
+  - session-info=1.0.0=py_0
   - six=1.16.0=pyh6c4a22f_0
   - sleef=3.5.1=h9b69904_2
   - snowballstemmer=2.2.0=pyhd8ed1ab_0

environment.yml

@@ -22,7 +22,7 @@ dependencies:
   - scanorama
   - scvelo
   - umap-learn
-  - sinfo
+  - session-info
   - pydot
   - scvi-tools
   - ipython

requirements.txt

@@ -19,7 +19,7 @@ leidenalg>=0.8.3
 scanorama
 scvelo
 umap-learn
-sinfo
+session-info
 pydot
 scvi-tools
 ipython

workbooks/standard_workflow_besca2.ipynb

@@ -57,7 +57,7 @@
     "\n",
     "import logging\n",
     "import seaborn as sns\n",
-    "from sinfo import sinfo\n",
+    "import session_info\n",
     "import warnings\n",
     "\n",
     "# Seed is fixed for reproducible analysis.\n",
@@ -1021,7 +1021,7 @@
    "outputs": [],
    "source": [
     "%%capture session_info\n",
-    "sinfo()\n"
+    "session_info.show()\n"
    ]
   },
   {
@@ -1030,7 +1030,7 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "logging.info(session_info)"
+    "logging.info(session_info.show())"
    ]
   },
   {