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Merge pull request #91 from bedapub/pcs-cellannot
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Fixed some inconsistencies in nomenclature
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@ajulienla
ajulienla authored Aug 7, 2020
2 parents 754843e + 60fbb1b commit 436f5c5
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Showing 2 changed files with 6 additions and 6 deletions.
6 changes: 3 additions & 3 deletions besca/datasets/genesets/CellNames_scseqCMs6_config.tsv
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Expand Up @@ -16,7 +16,7 @@ CD8Tcell Tcell 1 14
Tcell Hematopoietic 2.25 10
CD8Tcell_IL7Rmax CD8Tcell 4 17
CD4Tcell_IL7Rmax CD4Tcell 4 17.5
RegTcell CD4Tcell 0.5 18
RegTcell CD4Tcell 1 18
cDC1 cDC 1 19
cDC2 cDC 1 20.5
cDC Myeloid 1 22
Expand All @@ -39,7 +39,7 @@ Macrophage_MARCO Macrophage 1 19.5
NKTcell Tcell 2 50
gdTcell Tcell 1.5 38
CytotoxCD4Tcell CD4Tcell 3 34
CytotoxCD8Tcell CD8Tcell 3 33
CytotoxCD8Tcell CD8Tcell 4 33
ExhCD8Tcell CD8Tcell 2 41
cDC_CCR7 cDC 1 42
Langerhans cDC 1 43
Expand Down Expand Up @@ -98,7 +98,7 @@ ILC3 InnateLymphoid 2 105
ActTcell Tcell 2 106
NaiTcell Tcell 1 107
McellGut Epithelial 2 60.9
Mast Hematopoietic 2.5 50.5
Mast Hematopoietic 2.5 10.5
ColorectalCancer None 2 110
T1Pneumocyte Pneumocyte 2 111
T2Pneumocyte Pneumocyte 2 112
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6 changes: 3 additions & 3 deletions besca/datasets/nomenclature/CellTypes_v1.tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -67,7 +67,7 @@ cone retinal bipolar cell cone retinal bipolar cell CL:0000752 ConeBipolar 5 ret
connective tissue cell connective tissue cell CL:0002320 ConnectiveTissue 1 animal cell CL:0000548
contractile cell contractile cell CL:0000183 Contractile 1 animal cell CL:0000548
cultured cell cultured cell CL:0000010 Cultured 0
CXCL9-positive macrophage DB:0000053 Macrophage_CXCL9 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
CXCL9-positive macrophage DB:0000055 Macrophage_CXCL9 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
cytotoxic CD56-dim natural killer cell cytotoxic CD56-dim natural killer cell CL:0000939 CD56dimNK 5 natural killer cell CL:0000623 innate lymphoid cell CL:0001065 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548
DN1 thymic pro-T cell DN1 thymic pro-T cell CL:0000894 DN1ProTcell 4 pro-T cell CL:0000827 lymphoid lineage restricted progenitor cell CL:0000838 hematopoietic cell CL:0000988 animal cell CL:0000548
dopaminergic neuron dopaminergic neuron CL:0000700 DopaminergicN 3 neuron CL:0000540 neural cell CL:0002319 animal cell CL:0000548
Expand Down Expand Up @@ -202,7 +202,7 @@ macrophage macrophage CL:0000235 Macrophage 3 myeloid leukocyte CL:0000766 h
male germ line stem cell male germ line stem cell CL:0000016 MaleGerm 4 germ line stem cell CL:0000014 stem cell CL:0000034 precursor cell CL:0011115 animal cell CL:0000548
malignant cell malignant cell CL:0001064 Malignant 1 neoplastic cell CL:0001063
mammary gland glandular cell mammary gland glandular cell CL:1001586 MammaryGlandular 3 glandular epithelial cell CL:0000150 epithelial cell CL:0000066 animal cell CL:0000548
MARCO-positive macrophage DB:0000052 Macrophage_MARCO 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
MARCO-positive macrophage DB:0000054 Macrophage_MARCO 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
mast cell mast cell CL:0000097 Mast 3 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
mature NK T cell mature NK T cell CL:0000814 NKTcell 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548
megakaryocyte megakaryocyte CL:0000556 Megakaryocyte 2 hematopoietic cell CL:0000988 animal cell CL:0000548
Expand All @@ -219,7 +219,7 @@ microfold cell M cell of gut CL:0000682 McellGut 3 endo-epithelial cell CL:0
microglial cell microglial cell CL:0000129 Microglial 5 central nervous system macrophage CL:0000878 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
microvascular endothelial cell microvascular endothelial cell CL:2000008 MicroVascEndo 5 microvascular endothelial cell CL:2000008 blood vessel endothelial cell CL:0000071 endothelial cell of vascular tree CL:0002139 endothelial cell CL:0000115 animal cell CL:0000548
monocyte monocyte CL:0000576 Monocyte 3 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
MSR1-positive macrophage DB:0000051 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
MSR1-positive macrophage DB:0000056 Macrophage_MSR1 4 macrophage CL:0000235 myeloid leukocyte CL:0000766 hematopoietic cell CL:0000988 animal cell CL:0000548
mucosal invariant T cell mucosal invariant T cell CL:0000940 MAIT 4 T cell CL:0000084 lymphocyte CL:0000542 hematopoietic cell CL:0000988 animal cell CL:0000548
Mueller cell Mueller cell CL:0000636 Mueller 5 astrocyte CL:0000127 macrogial cell CL:0000126 glial cell CL:0000125 neural cell CL:0002319 animal cell CL:0000548
multi fate stem cell multi fate stem cell CL:0000048 MultiFateStem 3 stem cell CL:0000034 precursor cell CL:0011115 animal cell CL:0000548
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