issue #13: removed references to evaluator.

bagherilab · Feb 9, 2018 · 463a99a · 463a99a
1 parent fa96b1c
commit 463a99a
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Showing 2 changed files with 2 additions and 6 deletions.
diff --git a/Swing/Swing.py b/Swing/Swing.py
@@ -548,7 +548,7 @@ def compile_roller_edges(self, self_edges=False):
         #todo: returns nothing?
         return
 
-    def make_static_edge_dict(self, true_edges, self_edges=False, lag_method='max_median'):
+    def make_static_edge_dict(self, self_edges=False, lag_method='max_median'):
         """
         Make a dictionary of edges
         :return:

diff --git a/run_swing.py b/run_swing.py
@@ -1,6 +1,5 @@
 import pandas as pd
 from Swing import Swing
-from Swing.util.Evaluator import Evaluator
 
 # Load data
 gene_start_column = 1
@@ -32,10 +31,7 @@
 
 
 # Load the reference standard for scoring in silico predictions
-evaluator = Evaluator(gold_standard_file, '\t')
-true_edges = evaluator.gs_flat.tolist()
-
-sg.make_static_edge_dict(true_edges, self_edges=False, lag_method='mean_mean')
+sg.make_static_edge_dict(self_edges=False, lag_method='mean_mean')
 ranked_edges = sg.make_sort_df(sg.edge_dict)
 
 roc_dict, pr_dict = sg.score(ranked_edges, gold_standard_file=gold_standard_file)