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revising bindTarget method such that only tissue cells are considered… #705

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Triggered via push January 21, 2025 20:27

allison-li-1016

allison/carcade-cell-classes

Status Success

Total duration 59s

Artifacts 1

build.yml

on: push

run-gradle-build

publish-jacoco-coverage

update-build-badges

Annotations

52 errors and 1 warning

[checkstyle] src/arcade/core/gui/GUI.java#L374 <com.puppycrawl.tools.checkstyle.checks.design.FinalClassCheck>: src/arcade/core/gui/GUI.java#L374

Class XMLFileFilter should be declared as final.

[checkstyle] src/arcade/patch/sim/output/PatchOutputSerializer.java#L148 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/sim/output/PatchOutputSerializer.java#L148

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L48

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L49

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L50

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L51

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L52

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L53

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L54

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L55 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L55

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L60 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L60

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L61 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L61

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/vis/PatchDrawer.java#L62 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/vis/PatchDrawer.java#L62

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L49 <com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck>: src/arcade/patch/agent/cell/PatchCellCART.java#L49

Variable 'binding' must be private and have accessor methods.

[checkstyle] src/arcade/patch/agent/cell/PatchCellCART.java#L206 <com.puppycrawl.tools.checkstyle.checks.blocks.NeedBracesCheck>: src/arcade/patch/agent/cell/PatchCellCART.java#L206

'if' construct must use '{}'s.

[checkstyle] src/arcade/patch/agent/cell/PatchCellTissue.java#L24 <com.puppycrawl.tools.checkstyle.checks.design.VisibilityModifierCheck>: src/arcade/patch/agent/cell/PatchCellTissue.java#L24

Variable 'binding' must be private and have accessor methods.

[checkstyle] src/arcade/patch/agent/module/PatchModuleMigration.java#L58 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleMigration.java#L58

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/patch/agent/module/PatchModuleProliferation.java#L126 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/module/PatchModuleProliferation.java#L126

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L40 <com.puppycrawl.tools.checkstyle.checks.naming.ConstantNameCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L40

Name 'IL2RBGa' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L46 <com.puppycrawl.tools.checkstyle.checks.naming.ConstantNameCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L46

Name 'IL2_IL2RBGa' must match pattern '^[A-Z][A-Z0-9]*(_[A-Z0-9]+)*$'.

[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L324 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L324

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/patch/agent/process/PatchProcessInflammation.java#L327 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/patch/agent/process/PatchProcessInflammation.java#L327

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L31

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L32

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L33

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesGraphFactory.java#L34

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L31

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L32

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L33

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L34

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L35

Missing a Javadoc comment.

[checkstyle] src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/patch/env/component/PatchComponentSitesPattern.java#L36

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/sim/PottsSeries.java#L215 <com.puppycrawl.tools.checkstyle.checks.TodoCommentCheck>: src/arcade/potts/sim/PottsSeries.java#L215

Comment matches to-do format 'TODO:'.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L41 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L41

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L42 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L42

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L43 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L43

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L48 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L48

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L49 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L49

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L50 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L50

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L51 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L51

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L52 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L52

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L53 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L53

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsDrawer.java#L54 <com.puppycrawl.tools.checkstyle.checks.javadoc.JavadocVariableCheck>: src/arcade/potts/vis/PottsDrawer.java#L54

Missing a Javadoc comment.

[checkstyle] src/arcade/potts/vis/PottsVisualization.java#L174 <com.puppycrawl.tools.checkstyle.checks.sizes.MethodLengthCheck>: src/arcade/potts/vis/PottsVisualization.java#L174

Method create3DDrawers length is 277 lines (max allowed is 150).

[checkstyle] test/arcade/patch/agent/cell/PatchCellCARTTest.java#L57 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/cell/PatchCellCARTTest.java#L57

Class 'PatchCellCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchCellCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

[checkstyle] test/arcade/patch/agent/cell/PatchCellCARTTest.java#L75 <com.puppycrawl.tools.checkstyle.checks.coding.EmptyStatementCheck>: test/arcade/patch/agent/cell/PatchCellCARTTest.java#L75

Empty statement.

[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L28 <com.puppycrawl.tools.checkstyle.checks.naming.TypeNameCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L28

Name 'inflammationMock' must match pattern '^[A-Z][a-zA-Z0-9]*$'.

[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L29 <com.puppycrawl.tools.checkstyle.checks.modifier.RedundantModifierCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L29

Redundant 'public' modifier.

[checkstyle] test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L40 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/process/PatchProcessMetabolismCARTTest.java#L40

Class 'PatchProcessMetabolismCARTTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessMetabolismCARTTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

[checkstyle] test/arcade/patch/agent/process/PatchProcessInflammationTest.java#L42 <com.puppycrawl.tools.checkstyle.checks.design.DesignForExtensionCheck>: test/arcade/patch/agent/process/PatchProcessInflammationTest.java#L42

Class 'PatchProcessInflammationTest' looks like designed for extension (can be subclassed), but the method 'setUp' does not have javadoc that explains how to do that safely. If class is not designed for extension consider making the class 'PatchProcessInflammationTest' final or making the method 'setUp' static/final/abstract/empty, or adding allowed annotation for the method.

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L1 <com.puppycrawl.tools.checkstyle.checks.sizes.FileLengthCheck>: test/arcade/potts/sim/Potts3DTest.java#L1

File length is 2,371 lines (max allowed is 2,000).

[checkstyle] test/arcade/potts/sim/Potts3DTest.java#L211 <com.puppycrawl.tools.checkstyle.checks.whitespace.EmptyForIteratorPadCheck>: test/arcade/potts/sim/Potts3DTest.java#L211

';' is followed by whitespace.

run-gradle-build

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Artifacts

Produced during runtime

Name	Size
jacoco-coverage	869 KB