Merge pull request #35 from aurora-multiphysics/fix-docker

Fix docker build by installing Proteus on Ubuntu base image.

docker/Dockerfile

@@ -2,17 +2,86 @@
 # cd docker
 # docker build --rm -t proteus:latest .
 
-# Get latest base MOOSE image
-FROM idaholab/moose:latest
+# Use Ubuntu as the base image
+FROM ubuntu:22.04
 
-# By default, two cores are used to compile
-ARG compile_cores=2
+# Set environment variables
+ENV DEBIAN_FRONTEND=noninteractive
+ENV PROTEUS_DIR=/proteus
+ENV MOOSE_DIR=/opt/moose
+ENV MOOSE_JOBS=4
+
+# Update and install dependencies
+RUN apt-get update && \
+    apt-get install -y \
+        gcc \
+        g++ \
+        gfortran \
+        cmake \
+        bison \
+        flex \
+        git \
+        python3 \
+        python3-dev \
+        python-is-python3 \
+        python3-packaging \
+        openmpi-bin \
+        libopenmpi-dev \
+        libboost-all-dev \
+        libtirpc-dev \
+        autoconf \
+        automake \
+	python3-yaml	\
+        libtool && \
+    # Set up the Proteus profile
+    echo "export CC=mpicc" > /root/.proteus_profile && \
+    echo "export CXX=mpicxx" >> /root/.proteus_profile && \
+    echo "export F90=mpif90" >> /root/.proteus_profile && \
+    echo "export F77=mpif77" >> /root/.proteus_profile && \
+    echo "export FC=mpif90" >> /root/.proteus_profile && \
+    echo "export MOOSE_DIR=$MOOSE_DIR" >> /root/.proteus_profile && \
+    echo "export PATH=\$PATH:$PROTEUS_DIR" >> /root/.proteus_profile && \
+    . /root/.proteus_profile
+
+# Increase git buffer size and clone MOOSE repository
+RUN git config --global http.postBuffer 524288000 && \
+    git config --global http.lowSpeedLimit 0 && \
+    git config --global http.lowSpeedTime 999999 && \
+    git clone --depth 1 https://github.com/idaholab/moose.git $MOOSE_DIR || \
+    { echo "Retrying..."; sleep 5; git clone --depth 1 https://github.com/idaholab/moose.git $MOOSE_DIR; }
+
+# Build PETSc
+RUN cd $MOOSE_DIR && \
+    unset PETSC_DIR PETSC_ARCH && \
+    ./scripts/update_and_rebuild_petsc.sh \
+        --CXXOPTFLAGS="-O3 -march=native" \
+        --COPTFLAGS="-O3 -march=native" \
+        --FOPTFLAGS="-O3 -march=native"
+
+# Build libMesh
+RUN cd $MOOSE_DIR && \
+    ./scripts/update_and_rebuild_libmesh.sh --with-mpi
+
+# Build WASP
+RUN cd $MOOSE_DIR && \
+    ./scripts/update_and_rebuild_wasp.sh
+
+# Configure AD
+RUN cd $MOOSE_DIR && \
+    ./configure --with-derivative-size=81
+
+# Copy Proteus source code
+RUN git clone https://github.com/aurora-multiphysics/proteus.git
 
 # Build Proteus
-RUN cd /$WORKDIR && \
-    git clone https://github.com/aurora-multiphysics/proteus.git && \
-    cd proteus && \
-    make -j"$compile_cores"
+RUN cd $PROTEUS_DIR && \
+    make -j $MOOSE_JOBS
+
+# Set working directory
+WORKDIR /proteus
+
+# Set entrypoint
+ENTRYPOINT ["/bin/bash"]
 
 # Run tests
 RUN cd /proteus && \