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Schemata and libraries for ingesting and clustering Neuropixel data

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neuropixel-pipeline

Schemata and libraries for ingesting and clustering Neuropixel data

Using dev-container

For the dev-container you have to be using either VSCode's Dev Container extension or its devcontainer-cli (which you can install using the dev container extension).

If you want to play with the schemas in a notebook, it's ideal to set your configuration using an env file (or you can set it at runtime with dj.config). To use the env file put a .env file in the .devcontainer/ folder with the contents of DJ_HOST, DJ_USER, and DJ_PASS env variables and the corresponding values. This file will be ignored by git.

Then just use the Dev Container command "Dev Containers: Reopen in Container". Alt text

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