Releases: althonos/peptides.py
Releases · althonos/peptides.py
v0.3.4
v0.3.3
v0.3.2
Added
Peptide.svger_descriptors
to compute SVGER descriptors from Tong et al. (2016).
Fixed
Peptide.physical_descriptors
not being computed byPeptide.descriptors
.
Documentation
- Refactor documentation of individual descriptors into their own class.
- Add missing
PCPDescriptors
andPhysicalDescriptors
to the API documentation.
v0.3.1
Fixed
peptides.datasets
data files missing from the source distribution.
v0.3.0
v0.2.0
Added
Peptide.counts
method to get the number of occurences of each amino acid in the peptide.Peptide.frequencies
to get the frequencies of each amino acid in the peptide.Peptide.pcp_descriptors
to compute the PCP descriptors from Mathura & Braun (2001).Peptide.sneath_vectors
to compute the descriptors from Sneath (1966).- Hydrophilicity descriptors from Barley (2018).
Peptide.structural_class
to predict the structural class of a protein using one of three reference datasets and one of four distance metrics.
Changed
Peptide.aliphatic_index
now supports unknown Leu/Ile residue (code J).- Swap order of
Peptide.hydrophobic_moment
arguments for consistency with profile methods. - Some
Peptide
functions now support vectorized code usingnumpy
if available.