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@Zymo-Research

Zymo Research

Innovative & Quality tools for Epigenetics Research and DNA/RNA Purification.

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  1. figaro figaro Public

    An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

    Python 83 26

  2. docker-bcl2fastq docker-bcl2fastq Public

    Docker container for Illumina bcl2fastq

    C 10 14

  3. miqScore16SPublic miqScore16SPublic Public

    Repo for public-facing 16s miq score

    HTML 8 5

  4. zymoTransmit zymoTransmit Public

    Python script to facilitate uploading COVID-19 test results to departments of health

    Python 8 2

  5. miqScoreShotgunPublic miqScoreShotgunPublic Public

    Repo for public-facing shotgun MIQ score

    HTML 7 5

  6. VirSieve VirSieve Public

    Run manager for the VirSieve Pipeline by Zymo Research

    Python 5 2

Repositories

Showing 10 of 37 repositories
  • aladdin-rnaseq Public

    Public repository for RNAseq pipeline to be run on Aladdin platform

    Zymo-Research/aladdin-rnaseq’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Jan 9, 2025
  • service-pipeline-documentation Public

    Public repository to educate customers about bioinformatics pipelines and reports for services we offer

    Zymo-Research/service-pipeline-documentation’s past year of commit activity
    HTML 4 1 1 0 Updated Jan 3, 2025
  • aladdin-shotgun Public
    Zymo-Research/aladdin-shotgun’s past year of commit activity
    Python 0 MIT 2 8 0 Updated Dec 16, 2024
  • VirSieve Public

    Run manager for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieve’s past year of commit activity
    Python 5 2 2 0 Updated Dec 16, 2024
  • aladdin-miqScore16S Public

    Nextflow pipeline that calculates MIQ score. Compatible with Aladdin platform

    Zymo-Research/aladdin-miqScore16S’s past year of commit activity
    Nextflow 1 GPL-3.0 0 0 0 Updated Dec 12, 2024
  • miqScore16SPublic Public

    Repo for public-facing 16s miq score

    Zymo-Research/miqScore16SPublic’s past year of commit activity
    HTML 8 GPL-3.0 5 6 2 Updated Dec 6, 2024
  • VirSieveVEP Public

    VEP functionality and called variant analysis for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieveVEP’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Dec 4, 2024
  • VirSieveGATK Public

    GATK functionality for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieveGATK’s past year of commit activity
    Python 1 GPL-3.0 1 1 0 Updated Dec 4, 2024
  • virsievefreyja Public

    Freyja portion of the virsieve pipeline

    Zymo-Research/virsievefreyja’s past year of commit activity
    Python 0 1 2 0 Updated Dec 3, 2024
  • VirSieveAlign Public

    Alignment and related functionality for the VirSieve Pipeline by Zymo Research

    Zymo-Research/VirSieveAlign’s past year of commit activity
    Python 0 GPL-3.0 1 1 0 Updated Nov 27, 2024
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