Skip to content

YuLab-SMU/ggtreeExtra

Folders and files

NameName
Last commit message
Last commit date

Latest commit

6de952d · Nov 4, 2024
Jul 11, 2024
Aug 3, 2023
Jan 10, 2024
Aug 9, 2021
Jul 7, 2022
Aug 10, 2021
Jul 7, 2020
May 28, 2020
Nov 4, 2024
Apr 14, 2022
May 4, 2023
Mar 8, 2023
Nov 4, 2024
Aug 22, 2022
Nov 4, 2022
Aug 10, 2021

Repository files navigation

ggtreeExtra: An R Package To Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”.

Bioc platform

‘ggtreeExtra’ extends the method for mapping and visualizing associated data on phylogenetic tree using ‘ggtree’. These associated data can be presented on the external panels to circular layout, fan layout, or other rectangular layout tree built by ‘ggtree’ with the grammar of ‘ggplot2’.

✍️ Author

Shuangbin Xu and GuangChuang Yu

School of Basic Medical Sciences, Southern Medical University.

If you use ggtreeExtra in published research. Please cite the paper:

S Xu, Z Dai, P Guo, X Fu, S Liu, L Zhou, W Tang, T Feng, M Chen, L Zhan, T Wu, E Hu, Y Jiang*, X Bo* and G Yu*. ggtreeExtra: Compact visualization of richly annotated phylogenetic data. Molecular Biology and Evolution. 2021, 38(9):4039-4042. doi: 10.1093/molbev/msab166.

⏬ Installation

The development version from github:

if (!requireNamespace("devtools", quietly=TRUE))
    install.packages("devtools")
devtools::install_github("xiangpin/ggtreeExtra")

The released version from Bioconductor:

if (!requireNamespace("BiocManager", quietly=TRUE))
    install.packages("BiocManager")

## BiocManager::install("BiocUpgrade") ## you may need this
BiocManager::install("ggtreeExtra")

🔰 Usage

Please refer to the online vignette.

💖 Contributing

We welcome any contributions! By participating in this project you agree to abide by the terms outlined in the Contributor Code of Conduct.

About

🍋 Add Geom Layers On Circular Or Other Layout Tree Of “ggtree”

Resources

License

Citation

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published