The evaluation of FDR in differentially expressed genes identification

This repository contains scripts that were used to generate resutls in paper titled "Exaggerated false positives by popular differential expression methods when analyzing human population samples".

1. transcriptomeProject.sh: This file contains all the steps to process and generate original and permuted data.
2. Codes to generate plots: scripts_plot
3. syntheticdata.R: This file contains codes to generate semi-synthetic data.
4. synthetic_subsample.R: This file contains codes to perform susampling for the semi-synthetic data.