Update Doxyfile

docs/source/Doxyfile

@@ -48,26 +48,26 @@ PROJECT_NAME           = "corese"
 # could be handy for archiving the generated documentation or if some version
 # control system is used.
 
-PROJECT_NUMBER         = 
+PROJECT_NUMBER         =
 
 # Using the PROJECT_BRIEF tag one can provide an optional one line description
 # for a project that appears at the top of each page and should give viewer a
 # quick idea about the purpose of the project. Keep the description short.
 
-PROJECT_BRIEF          = 
+PROJECT_BRIEF          =
 
 # With the PROJECT_LOGO tag one can specify a logo or an icon that is included
 # in the documentation. The maximum height of the logo should not exceed 55
 # pixels and the maximum width should not exceed 200 pixels. Doxygen will copy
 # the logo to the output directory.
 
-PROJECT_LOGO           = 
+PROJECT_LOGO           =
 
 # With the PROJECT_ICON tag one can specify an icon that is included in the tabs
 # when the HTML document is shown. Doxygen will copy the logo to the output
 # directory.
 
-PROJECT_ICON           = 
+PROJECT_ICON           =
 
 # The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) path
 # into which the generated documentation will be written. If a relative path is
@@ -681,7 +681,7 @@ FORCE_LOCAL_INCLUDES   = NO
 # documentation for inline members.
 # The default value is: YES.
 
-INLINE_INFO            = YES
+INLINE_INFO            = NO
 
 # If the SORT_MEMBER_DOCS tag is set to YES then doxygen will sort the
 # (detailed) documentation of file and class members alphabetically by member
@@ -957,6 +957,7 @@ INPUT                  =  ../../corese-core/src/main/java/fr/inria/corese/core/G
                           ../../corese-core/src/main/java/fr/inria/corese/core/print/ResultFormat.java \
                           ../../corese-core/src/main/java/fr/inria/corese/core/shacl/Shacl.java \
                           ../../corese-core/src/main/java/fr/inria/corese/core/api/Loader.java \
+                          ../../corese-jena/src/main/java/fr/inria/corese/jena/ \
 # This tag can be used to specify the character encoding of the source files
 # that doxygen parses. Internally doxygen uses the UTF-8 encoding. Doxygen uses
 # libiconv (or the iconv built into libc) for the transcoding. See the libiconv
@@ -995,13 +996,13 @@ INPUT_FILE_ENCODING    =
 # be provided as doxygen C comment), *.py, *.pyw, *.f90, *.f95, *.f03, *.f08,
 # *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
 
-FILE_PATTERNS          = *.java 
-                         
+FILE_PATTERNS          = *.java
+
 # The RECURSIVE tag can be used to specify whether or not subdirectories should
 # be searched for input files as well.
 # The default value is: NO.
 
-RECURSIVE              = NO
+RECURSIVE              = YES
 
 # The EXCLUDE tag can be used to specify files and/or directories that should be
 # excluded from the INPUT source files. This way you can easily exclude a
@@ -1010,7 +1011,7 @@ RECURSIVE              = NO
 # Note that relative paths are relative to the directory from which doxygen is
 # run.
 
-EXCLUDE                = 
+EXCLUDE                =
 
 # The EXCLUDE_SYMLINKS tag can be used to select whether or not files or
 # directories that are symbolic links (a Unix file system feature) are excluded
@@ -1034,7 +1035,7 @@ EXCLUDE_PATTERNS       =
 # wildcard * is used, a substring. Examples: ANamespace, AClass,
 # ANamespace::AClass, ANamespace::*Test
 
-EXCLUDE_SYMBOLS        = java::lang fr::inria::corese::sparql* 
+EXCLUDE_SYMBOLS        = java::lang fr::inria::corese::sparql*
 
 # The EXAMPLE_PATH tag can be used to specify one or more files or directories
 # that contain example code fragments that are included (see the \include
@@ -1277,7 +1278,7 @@ ALPHABETICAL_INDEX     = YES
 # after removing the prefix.
 # This tag requires that the tag ALPHABETICAL_INDEX is set to YES.
 
-IGNORE_PREFIX          = 
+IGNORE_PREFIX          =
 
 #---------------------------------------------------------------------------
 # Configuration options related to the HTML output
@@ -2848,4 +2849,3 @@ MSCGEN_TOOL            =
 # command).
 
 MSCFILE_DIRS           =
-