The bdi-kit is a library that assist users in performing data harmonization. It provides state-of-the-art tools to streamline the process of integrating and transforming disparate datasets (with a focus on biomedical data), and includes APIs for performing tasks such as:
- Schema matching
- Value matching
- Data transformation to a target schema/standard
Warning: bdi-kit is currently in alpha stage and under heavy development. Expect APIs to change.
Documentation is available at https://bdi-kit.readthedocs.io/.
You can install the latest stable version of this library from PyPI:
pip install bdi-kit
To install the latest development version:
pip install git+https://github.com/VIDA-NYU/bdi-kit@devel
To learn more about making a contribution to bdi-kit, please see our Contributing guide.