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lgatto committed Jan 3, 2024
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30 changes: 15 additions & 15 deletions DESCRIPTION
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Package: scpdata
Type: Package
Title: Single-Cell Proteomics Data Package
Version: 1.9.2
Version: 1.11.1
Authors@R:
c(person("Christophe", "Vanderaa",
email = "[email protected]",
comment = c(ORCID = "0000-0001-7443-5427"),
role = c("aut", "cre")),
email = "[email protected]",
comment = c(ORCID = "0000-0001-7443-5427"),
role = c("aut", "cre")),
person("Laurent", "Gatto",
email = "[email protected]",
comment = c(ORCID = "0000-0002-1520-2268"),
role = "aut"))
Description: The package disseminates mass spectrometry (MS)-based
single-cell proteomics (SCP) datasets. The data were collected
from published work and formatted using the `scp` data structure.
The data sets contain quantitative information at spectrum,
peptide and/or protein level for single cells or minute sample
email = "[email protected]",
comment = c(ORCID = "0000-0002-1520-2268"),
role = "aut"))
Description: The package disseminates mass spectrometry (MS)-based
single-cell proteomics (SCP) datasets. The data were collected
from published work and formatted using the `scp` data structure.
The data sets contain quantitative information at spectrum,
peptide and/or protein level for single cells or minute sample
amounts.
Depends:
R (>= 4.2.0),
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BiocCheck,
rmarkdown,
testthat
biocViews:
ExperimentData,
ExpressionData,
biocViews:
ExperimentData,
ExpressionData,
ExperimentHub,
ReproducibleResearch,
MassSpectrometryData,
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17 changes: 9 additions & 8 deletions NEWS.md
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# scpdata 1.11

# scpdata 1.9
## scpdata 1.11.1

## scpdata 1.9.3
- Added contribution vignette.

(nothing yet)
# scpdata 1.9

## scpdata 1.9.2

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- New Bioconductor 3.16 (stable) release

# scpdata 1.5
# scpdata 1.5

## scpdata 1.5.6

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## scpdata 1.5.3

- tests: make sure each dataset is available
- docs: don't run examples. They take too long and crash the checks.
- docs: don't run examples. They take too long and crash the checks.

## scpdata 1.5.2

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## scpdata 1.3.1

- williams2020: added 2 new datasets (need to be sent to EH)
- all: added supplementary metadata fields in `metadata.csv`.
- all: added supplementary metadata fields in `metadata.csv`.
- zhu2019EL: split protein data into protein_intensity and protein_iBAQ
- dou2019: modified peptide data by excluding low-quality PSMs

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## scpdata 1.1.2

- dou2019_*: Fixed duplicated data, added identification score and
probabilities data, and generated peptide data.
- dou2019_*: Fixed duplicated data, added identification score and
probabilities data, and generated peptide data.
- zhu2018MCP: added protein data (intensity, LFQ and iBAQ)
- zhu2018NC_*: added protein data (intensity, LFQ and iBAQ)
- metadata: included additional meta fields: PreprocessingSoftware and
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