Merge pull request #63 from UCLouvain-CBIO/issue59

Unit testing scplainer (#59)
UCLouvain-CBIO · Jul 9, 2024 · bc5c163 · bc5c163
2 parents 5e094c6 + 026c233
commit bc5c163
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -22,7 +22,6 @@ Depends:
     R (>= 4.3.0),
     QFeatures (>= 1.13.5)
 Imports:
-    dplyr,
     IHW,
     ggplot2,
     ggrepel,
@@ -40,6 +39,7 @@ Imports:
     utils
 Suggests:
     BiocStyle,
+    BiocGenerics,
     MsDataHub (>= 1.3.3),
     impute,
     knitr,
@@ -50,6 +50,7 @@ Suggests:
     scpdata,
     sva,
     testthat,
+    vdiffr,
     vsn,
     uwot
 License: Artistic-2.0

diff --git a/NAMESPACE b/NAMESPACE
@@ -66,8 +66,6 @@ importFrom(SummarizedExperiment,assayNames)
 importFrom(SummarizedExperiment,assays)
 importFrom(SummarizedExperiment,colData)
 importFrom(SummarizedExperiment,rowData)
-importFrom(dplyr,group_by)
-importFrom(dplyr,summarise)
 importFrom(ggrepel,geom_label_repel)
 importFrom(ggrepel,geom_text_repel)
 importFrom(matrixStats,colMedians)

diff --git a/NEWS.md b/NEWS.md
@@ -1,5 +1,10 @@
 ## scp 1.15
 
+## scp 1.15.1
+
+- test: added unit tests for scplainer: ScpModel-Class, 
+  scpModelFit-Class, ScpModel-Workflow
+
 ## scp 1.15.0
 
 - New Bioconductor 3.20 (devel) release
@@ -12,10 +17,6 @@
 
 # scp 1.13
 
-## scp 1.13.6
-
-(nothing yet)
-
 ## scp 1.13.5
 
 - fix: fixed small error in degrees of freedom