Add Panel dashboard wrapper for Voila (#667) #3238
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| name: autobuild | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: ["*"] | |
| push: | |
| branches: [main] | |
| release: | |
| types: [published] | |
| schedule: | |
| # 01:30 UTC = 20:30/21:30 America/New_York = 03:30/04:30 Europe/Athens | |
| - cron: "30 1 * * *" | |
| env: | |
| PYTEST_SPLIT_GROUPS: 6 # How many parallel groups to create for the tests. | |
| PYTEST_TEST_DURATIONS_CACHE_KEY: "test_durations" # Test durations cache key prefix | |
| jobs: | |
| format-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| cache: pip | |
| cache-dependency-path: ".github/workflows/tiledb-cloud-py.yaml" | |
| - name: Install pre-commit | |
| run: pip install pre-commit | |
| - name: Restore pre-commit cache | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.cache/pre-commit | |
| key: pre-commit-${{ hashFiles('.pre-commit-config.yaml') }} | |
| - name: Pre-commit checks | |
| run: pre-commit run -a -v | |
| run-tests: | |
| runs-on: ${{ matrix.os }} | |
| if: ${{ github.event_name != 'release' }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-20.04 | |
| # - macos-12 | |
| python-version: ["3.9"] | |
| dependencies: | |
| - pinned | |
| - fresh | |
| include: | |
| - os: ubuntu-20.04 | |
| path: ~/.cache/pip | |
| # - os: macos-12 | |
| # path: ~/Library/Caches/pip | |
| pytest-split-group: [1, 2, 3, 4, 5, 6] # Range the parallel test groups defined by env.PYTEST_SPLIT_GROUPS | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Cache pinned dependencies | |
| if: ${{ matrix.dependencies == 'pinned' }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ matrix.path }} | |
| key: ${{ runner.os }}-py${{ matrix.python-version }}-pip-${{ hashFiles(format('./requirements-py{0}.txt', matrix.python-version)) }} | |
| restore-keys: | | |
| ${{ runner.os }}-py${{ matrix.python-version }}-pip- | |
| # This step ensures that every month we have a new Pip cache, so that | |
| # we don't have one cache sitting for months growing ever-staler. | |
| - name: Get month for cache key | |
| id: month | |
| if: ${{ matrix.dependencies == 'fresh' }} | |
| run: | | |
| date +'cache-month=%Y-%m' >> "$GITHUB_ENV" | |
| - name: Cache fresh install dependencies | |
| if: ${{ matrix.dependencies == 'fresh' }} | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ matrix.path }} | |
| key: ${{ runner.os }}-py${{ matrix.python-version }}-pip-fresh-${{ env.cache-month }} | |
| restore-keys: | | |
| ${{ runner.os }}-py${{ matrix.python-version }}-pip-fresh- | |
| ${{ runner.os }}-py${{ matrix.python-version }}-pip- | |
| - name: Install prerequisites | |
| run: | | |
| pip install --upgrade \ | |
| pip \ | |
| wheel \ | |
| pytest \ | |
| pytest-cov \ | |
| pytest-explicit \ | |
| pytest-split \ | |
| setuptools \ | |
| setuptools-scm | |
| - name: Install pinned dependencies | |
| if: ${{ matrix.dependencies == 'pinned' }} | |
| run: | | |
| pip install -r requirements-py${{ matrix.python-version }}.txt | |
| - name: Install TileDB-Cloud-Py | |
| run: | | |
| pip install .[tests] | |
| pip install tiledb-vector-search --no-deps | |
| # Tries to restore the .test_durations file from the cache to use for splitting tests into groups. | |
| - name: "Attempt to restore .test_durations from cache" | |
| id: test-duration-cache-restore | |
| uses: actions/cache/restore@v4 | |
| continue-on-error: true | |
| with: | |
| path: .test_durations | |
| key: ${{ env.PYTEST_TEST_DURATIONS_CACHE_KEY }}-${{ hashFiles('.test_durations') }} | |
| restore-keys: | | |
| ${{ env.PYTEST_TEST_DURATIONS_CACHE_KEY }}- | |
| - name: "Check .test_durations file" | |
| run: | | |
| if [ -f .test_durations ]; then | |
| echo ".test_durations file exists." | |
| file_content=$(cat .test_durations) | |
| echo $file_content | |
| if [ "$file_content" = "null" ]; then | |
| echo "Removing 'null' .test_durations file." | |
| rm .test_durations | |
| fi | |
| else | |
| echo ".test_durations file does not exist." | |
| fi | |
| - name: Run tests | |
| # Test pinned dependencies on commit / tag and fresh installs on nightlies | |
| if: (matrix.dependencies == 'fresh') == (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| run: | | |
| pytest -sv \ | |
| --tb short \ | |
| --color yes \ | |
| --splits ${{ env.PYTEST_SPLIT_GROUPS }} \ | |
| --group ${{ matrix.pytest-split-group }} \ | |
| --store-durations \ | |
| --splitting-algorithm least_duration \ | |
| --clean-durations \ | |
| -r fExX \ | |
| || .github/scripts/retry 2 \ | |
| pytest -sv \ | |
| --last-failed \ | |
| --tb short \ | |
| --color yes \ | |
| -r fExX | |
| env: | |
| TILEDB_REST_TOKEN: ${{ secrets.TILEDB_CLOUD_HELPER_VAR }} | |
| # Uploads the partial durations from one of the run (specifically from the ubuntu run but it would be the same with macos). | |
| # These partial duration files will be combined into a single .test_durations file and used to update the test cache for the next runs | |
| - name: "Upload partial durations" | |
| uses: actions/upload-artifact@v4 | |
| continue-on-error: true | |
| # Ensure that we save the partial test durations from an ubuntu job that the tests actually run. | |
| if: matrix.os == 'ubuntu-20.04' && matrix.python-version == '3.9' && (matrix.dependencies == 'fresh') == (github.event_name == 'schedule' || github.event_name == 'workflow_dispatch') | |
| with: | |
| name: partial-test-durations-${{ matrix.pytest-split-group }} | |
| path: .test_durations | |
| retention-days: 1 | |
| overwrite: true | |
| # Download and combine the partial test durations uploaded by the run-tests job, | |
| # into a single file and save it to cache for future use. | |
| save-test-durations-to-cache: | |
| name: Download, combine and save test_durations to the actions cache | |
| runs-on: ubuntu-latest | |
| needs: run-tests | |
| continue-on-error: true | |
| env: | |
| FolderPrefix: partial-test-durations | |
| steps: | |
| - name: Download partial durations | |
| uses: actions/download-artifact@v4 | |
| with: | |
| # Download partial test duration artifacts in the same folder | |
| path: partial-test-durations | |
| pattern: partial-test-durations-* | |
| - name: "Combine test duration cache files in .test_durations" | |
| run: | | |
| jq -s add $(find partial-test-durations -type f -name .test_durations) > .test_durations | |
| cat .test_durations | |
| - name: "Save combined test durations to cache" | |
| uses: actions/cache/save@v4 | |
| with: | |
| path: .test_durations | |
| key: ${{ env.PYTEST_TEST_DURATIONS_CACHE_KEY }}-${{ hashFiles('.test_durations') }} | |
| upload-to-pypi: | |
| # Upload a wheel only if the entire matrix succeeds. | |
| needs: | |
| - format-check | |
| # Run on release, or on commits to the primary branch. | |
| # Artifacts are uploaded to the real PyPI only when a release is published; | |
| # otherwise, they are sent just to the test instance. | |
| if: > | |
| (github.event_name == 'release' && github.event.action == 'published') || | |
| (github.event_name == 'push') | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.9" | |
| cache: pip | |
| cache-dependency-path: requirements-py3.9.txt | |
| - name: Make fake version for Test PyPI | |
| if: ${{ github.event_name != 'release' }} | |
| run: | | |
| date -u +'SETUPTOOLS_SCM_PRETEND_VERSION=0.0.0.dev%Y%m%d%H%M' >> "$GITHUB_ENV" | |
| - name: Build wheel | |
| run: | | |
| pip install --upgrade pip build wheel setuptools setuptools-scm | |
| pip install -r requirements-py3.9.txt | |
| python -m build | |
| - name: Publish to PyPI | |
| if: ${{ github.event_name == 'release' }} | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| - name: Publish to Test PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| repository-url: https://test.pypi.org/legacy/ | |
| user: __token__ | |
| password: ${{ secrets.TEST_PYPI_API_TOKEN }} | |
| # It's OK if this fails due to an already-existing file, | |
| # if the test publish was run more than once for a revision. | |
| skip-existing: true |