🔖 rhto-GEM v1.2.2

SysBioChalmers · Oct 21, 2019 · 73f1531 · 73f1531
1 parent 6be81f9
commit 73f1531
Show file tree

Hide file tree

Showing 6 changed files with 4,558 additions and 9,347 deletions.
diff --git a/ModelFiles/dependencies.txt b/ModelFiles/dependencies.txt
@@ -1,4 +1,4 @@
 MATLAB	9.3.0.713579 (R2017b)
 libSBML	5.17.0
-RAVEN_toolbox	commit dc17fb6
+RAVEN_toolbox	commit 397e944
 COBRA_toolbox	3.0.6
diff --git a/ModelFiles/mat/rhto.mat b/ModelFiles/mat/rhto.mat
diff --git a/ModelFiles/xlsx/rhto.xlsx b/ModelFiles/xlsx/rhto.xlsx
diff --git a/ModelFiles/xml/rhto.xml b/ModelFiles/xml/rhto.xml
diff --git a/history.md b/history.md
@@ -1,13 +1,19 @@
 # History
 
+### rhto v1.2.2:
+* Features
+  * Data and analysis complementary to Lopes _et al_. under review (PR #38).
+* Documentation
+  * Update citation of _rhto-GEM_ paper, now available from Biotechnology & Bioengineering (PR #39).
+
 ### rhto v1.2.1:
-* Features:
+* Features
   * Curate grRules and existence of several reactions based on [doi:10.1186/s12934-015-0217-5](https://doi.org/10.1186/s12934-015-0217-5) (PR #34).
   * Curate grRules of xylose and glucose transporters based on differential expression in proteomics study [doi:10.1186/s13068-019-1478-8](https://doi.org/10.1186/s13068-019-1478-8) (PR #34).
-* Fix:
+* Fix
   * Bug in `sumBioMass` resulted in incorrect fitted carbohydrate fraction of biomass equation, also resulting in incorrect NGAM (PR #33).
   * Remove four duplicate reactions (`r_4235`, `y200008`, `r_1000`, `r_4262`) (PR #34).
-* Refactor:
+* Refactor
   * Standardize two complex gene associations (`r_0831`, `r_0832`) (PR #34).
 
 ### rhto v1.2.0:
@@ -54,7 +60,7 @@
   * Include legend in validation graph (PR #18).
 
 ### rhto v1.0.0:
-* Documentation:
+* Documentation
   * Update readme.md to include correct links to Zenodo and bioRxiv (PR #15).
 
 ### rhto v0.0.2:

diff --git a/version.txt b/version.txt
@@ -1 +1 @@
-1.2.1
+1.2.2