chore: merge GECKO2 development into GECKO2 #228
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
…e optimizations concern getEnzymeCodes and matchKcats. The findInDBOld is still needed for KEGG matches, I haven't looked at that. Some new optimizations were also introduced since there were other bottlenecks for yeast. I use containers.Map which may require a somewhat new matlab version.
Introduction of optimizations originally developed in Gecko Light.
Let's do that.
Since this is not urgent, I created a separate issue for this #243 |
edkerk
approved these changes
Feb 26, 2023
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Main improvements in this PR:
This PR partially resolves #227 and aims to incorporate all GECKO2 development into the GECKO2 branch. Upon merging, the
gecko2develbranch is to be deleted.