Update herdingspikes version: 0.4.5 #89
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| name: Test sorter images in singularity | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| branches: [main] | |
| types: [synchronize, opened, reopened, ready_for_review] | |
| jobs: | |
| test-images: | |
| name: Test on (${{ matrix.os }}) | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| # "macos-latest", "windows-latest" | |
| os: ["ubuntu-latest", ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - uses: eWaterCycle/setup-singularity@v7 | |
| with: | |
| singularity-version: 3.8.3 | |
| - name: Python version | |
| run: | | |
| python --version | |
| - name: Install dependencies | |
| run: | | |
| pip install tridesclous | |
| pip install -r requirements_test.txt | |
| - name: Run test singularity containers | |
| run: | | |
| pip install tridesclous | |
| pytest -sv tests/test_singularity_containers.py |