Merge pull request #12 from ScilifelabDataCentre/develop

New sample collection

content/collections/136/1.md

@@ -1,5 +1,5 @@
 ---
-id: c19dp:collection:SE_1136_3
+id: c19dp:collection:SE_1136_1
 biobank: c19dp:biobank:SE_1136
 name: Biobank för kritiskt sjuka och frivilliga i Region Skåne
 acronym: SWECRITcovid19
@@ -36,7 +36,7 @@ contact: c19dp:contact:SE_1136_1
 publications_list:
 contact_priority: 1
 aliases:
-    /menu/main/app-scd/collection/c19dp:collection:SE_1136_3
+    /menu/main/app-scd/collection/c19dp:collection:SE_1136_1
 collection_contact:
     id: c19dp:contact:SE_1136_1
     bbmri_id:

content/collections/914/11.md

@@ -0,0 +1,48 @@
+---
+id: c19dp:collection:SE_1914_11
+biobank: c19dp:biobank:SE_1914
+name: The COVID-19 Immunity study
+acronym: COMMUNITY
+parent_collection:
+local_id: N/A
+bbmri_id:
+country: SE
+description: The COMMUNITY pandemic surveillance cohort was initiated in April 2020 and comprises 2149 healthcare workers and 118 COVID-19 patients. Blood samples are collected every four months. Serological and cellular immune responses are continuously mapped to demography, vaccination(s) and prior infection. qPCR screening programs, including viral sequencing and culturing, are conducted during time points with high viral transmission and in response to the threat of emerging variants of concern (VOC).
+website_url:
+bioresource_reference:
+ethics_id: 2020-01653
+sampling_startdate: 2020-04-01T11:00:00+0000
+sampling_enddate:
+storage_duration:
+collection_type: [Disease specific, Hospital, Sample]
+collection_category: "Research sample collection"
+data_categories: [Biological samples, Medical records]
+order_of_magnitude: 4
+timestamp: 2022-05-17T06:46:41+0000
+biobank_label:
+sub_collections:
+diagnosis_available:
+order_of_magnitude_donors: 3
+autopsy: FALSE
+minors: FALSE
+inclusion_criteria: COVID-19 patients admitted to Danderyd hospital. Inclusion criterion was COVID-19 diagnosis based on reverse-transcriptase polymerase chain reaction viral RNA detection of nasopharyngeal or oropharyngeal swabs or clinical presentation. Healthcare workers at Danderyd hospital.
+exclusion_criteria:
+materials: [Buffy Coat,Nasal swab,PBMC,Peripheral blood cells,Plasma,Serum]
+head_firstname: Charlotte
+head_lastname: Thålin
+head_role:
+display_collection_contact: TRUE
+contact: c19dp:contact:SE_1914_8
+publications_list:
+contact_priority: 1
+aliases:
+    /menu/main/app-scd/collection/c19dp:collection:SE_1914_11
+collection_contact:
+    id: c19dp:contact:SE_1914_8
+    bbmri_id:
+    title_before_name:
+    first_name: Charlotte
+    last_name: Thålin
+    title_after_name:
+    email: [email protected]
+---