3.9.2

Fixed a bug that caused tiddit to crash when calling variants overlaping masked genomic regions

3.9.1

Changed the graphlib import statement - now it should work on python 3.11

3.9.0

TIDDIT now uses a custom built local de novo assembler instead of the fermikit like pipeline for clip read assembly.

Updated the dockerfile

bug fixes

3.8.0

Fewer false positive deletions by making sure reference regions consisting of NNNNNNN are not included in the coverage calculations.

Minor changes to the readme file

3.7.0

Various fixes including:
variant calling in single-end data
improved parallelization of the variant extraction step
added option to overwrite existing output directory

3.6.1

Fixed a bug that caused tiddit to crash on small datasets by implementing a cusom percentile function.

3.6.0

Improved positioning of SV

minor bug fix

3.5.2

Fixing the bug that causes TIDDIT assembly module to crash on XA tags with contigs containing "-".

3.5.1

TIDDIT will now quit if the output folder cannot be created

Small update to readme file

3.5.0

Use re split in the gc module.