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Releases: Russel88/CRISPRCasTyper

v1.1.2

14 May 11:14
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  • Change the color scheme, such that interference, adaptation, and processing modules are colored differently
  • Fix a regex bug where Cas10/11/12/13 were erroneously counted as a Cas1 match for calculating adaptation completion

v1.1.1

13 May 12:18
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Fix bug with some low quality matches missing in the plot

v1.1.0

07 May 15:41
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Include columns which indicates % completion of the interference and adaptation modules.
Also includes updated scores, such that cas6 no longer gives scores to I-C, and csm3 now gives scores to III-F.
Csf3_Csf1 fusion protein is renamed to Csf3-Csf1 for consistency,

v1.0.7

01 May 09:08
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Fix problem with 2 gene operons with an unspecific single effector gene and a specific accessory gene, for which the specific accessory gene falsely overruled the typing. These are now called Ambiguous.

v1.0.6

26 Apr 13:44
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Fix plotting bug for sequences without CRISPRs

v1.0.4

22 Apr 15:40
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  • Fix plotting bugs with expansions of arrays from multifastas
  • Make sure arrays are plotted with expansions of orphan Cas operons and CRISPR-Cas loci
  • Make sure only genes within the expansions boundaries are plotted

v1.0.3

22 Apr 14:29
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Optimize plot expansions:

  • Expansions of plot is now only defined in bp
  • If expansions overlap with other operons, these Cas genes are still colored red, and not green
  • Make sure all genes are added correctly for loci spanning ends of circular sequences

v1.0.2

21 Apr 09:46
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Fix plotting of loci spanning ends of circular sequences

v1.0.1

19 Apr 19:42
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v1.0.1 - Fix bug

v1.0.0

19 Apr 18:56
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First release