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Reed-CompBio · Oct 26, 2024 · a7ee85b · a7ee85b
1 parent 541812b
commit a7ee85b
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Showing 3 changed files with 13 additions and 1,137 deletions.
diff --git a/config/config.yaml b/config/config.yaml
@@ -45,7 +45,7 @@ container_registry:
 algorithms:
       - name: "pathlinker"
         params:
-              include: false
+              include: true
               run1:
                   k: range(100,201,100)
 
@@ -56,11 +56,11 @@ algorithms:
                   b: [5, 6]
                   w: np.linspace(0,5,2)
                   d: [10]
-                  dummy_mode: ["terminals"] 
+                  dummy_mode: ["terminals"]
 
       - name: "omicsintegrator2"
         params:
-              include: false
+              include: true
               run1:
                   b: [4]
                   g: [0]
@@ -70,26 +70,26 @@ algorithms:
 
       - name: "meo"
         params:
-              include:  false
+              include:  true
               run1:
                   max_path_length: [3]
                   local_search: ["Yes"]
                   rand_restarts: [10]
 
       - name: "mincostflow"
         params:
-              include: false
+              include: true
               run1:
                   flow: [1] # The flow must be an int
                   capacity: [1]
 
       - name: "allpairs"
         params:
-              include: false
+              include: true
 
       - name: "domino"
         params:
-              include: false
+              include: true
               run1:
                   slice_threshold: [0.3]
                   module_threshold: [0.05]