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Simulate linked depth by simulating reads #26

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Simulate linked depth by simulating reads #26

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Commits on Aug 22, 2024

  1. create functions linked_depth and independent_depth

    @MoiColl @grahamgower
    MoiColl authored and grahamgower committed Aug 22, 2024
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  2. correct transposed issue in linked_depth() and assert dimentions betw… 

    …een DP and gm
    @MoiColl @grahamgower
    MoiColl authored and grahamgower committed Aug 22, 2024
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  3. Making read depth linked calculation as a circular sequence and refin… 

    …ing other functions such as calculating Major and minor alleles based on Genotype Likelihoods
    @MoiColl @grahamgower
    MoiColl authored and grahamgower committed Aug 22, 2024
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Commits on Aug 28, 2024

  1. Improving the Major-minor identification function, making the GL norm… 

    …alization its own function and rearanging the indeces in the GL output in the subset_GL function to correspond to the indeces inputed in the alleles_per_site argument
    @MoiColl
    MoiColl committed Aug 28, 2024
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