rm deprecated arg

RGLab · Nov 18, 2020 · 47a963b · 47a963b
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commit 47a963b
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diff --git a/vignettes/gates.Rmd b/vignettes/gates.Rmd
@@ -82,7 +82,7 @@ gs_update_channels(gs2, map = data.frame(old = c("B710-A")
 
 #redundant
 cs <- gs_cyto_data(gs3)
-fr <- cs[[1]]
+fr <- cs[[1, return = "flowFrame"]]
 new_col <- exprs(fr)[,8,drop=F]
 colnames(new_col) <- "channelA"
 fr <- fr_append_cols(fr, new_col)

diff --git a/vignettes/introduction.Rmd b/vignettes/introduction.Rmd
@@ -70,7 +70,7 @@ new_col <- exprs(fr)[,8,drop=F]
 colnames(new_col) <- "channelA"
 fr <- fr_append_cols(fr, new_col)
 write.FCS(fr, files[2])
-cqc_data[[2]] <- load_cytoframe_from_fcs(thisfile, is_h5 = TRUE)
+cqc_data[[2]] <- load_cytoframe_from_fcs(thisfile)
 
 #typo
 cf <- cqc_data[[2]]