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diff --git a/docs/QuEST_8c.html b/docs/QuEST_8c.html
diff --git a/docs/QuEST_8c_source.html b/docs/QuEST_8c_source.html
diff --git a/docs/QuEST_8h.html b/docs/QuEST_8h.html
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diff --git a/docs/QuEST__common_8c.html b/docs/QuEST__common_8c.html
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diff --git a/docs/QuEST__complex_8h.html b/docs/QuEST__complex_8h.html
@@ -27,7 +27,7 @@
             <div class="container">
                 <div class="navbar-header">
                     <a class="navbar-brand"><img alt="Logo" src="logo.png"/></a>
-                    <a class="navbar-brand"><b>QuEST</b> v3.3.0<br>The Quantum Exact Simulation Toolkit</a>
+                    <a class="navbar-brand"><b>QuEST</b> v3.4.0<br>The Quantum Exact Simulation Toolkit</a>
                 </div>
             </div>
         </nav>

diff --git a/docs/QuEST__complex_8h_source.html b/docs/QuEST__complex_8h_source.html
@@ -27,7 +27,7 @@
             <div class="container">
                 <div class="navbar-header">
                     <a class="navbar-brand"><img alt="Logo" src="logo.png"/></a>
-                    <a class="navbar-brand"><b>QuEST</b> v3.3.0<br>The Quantum Exact Simulation Toolkit</a>
+                    <a class="navbar-brand"><b>QuEST</b> v3.4.0<br>The Quantum Exact Simulation Toolkit</a>
                 </div>
             </div>
         </nav>

diff --git a/docs/QuEST__cpu_8c.html b/docs/QuEST__cpu_8c.html
diff --git a/docs/QuEST__cpu_8c_source.html b/docs/QuEST__cpu_8c_source.html
diff --git a/docs/QuEST__cpu__distributed_8c.html b/docs/QuEST__cpu__distributed_8c.html
diff --git a/docs/QuEST__cpu__distributed_8c_source.html b/docs/QuEST__cpu__distributed_8c_source.html
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diff --git a/docs/QuEST__cpu__local_8c.html b/docs/QuEST__cpu__local_8c.html
diff --git a/docs/QuEST__cpu__local_8c_source.html b/docs/QuEST__cpu__local_8c_source.html
diff --git a/docs/QuEST__debug_8h.html b/docs/QuEST__debug_8h.html
diff --git a/docs/QuEST__debug_8h_source.html b/docs/QuEST__debug_8h_source.html
@@ -27,7 +27,7 @@
             <div class="container">
                 <div class="navbar-header">
                     <a class="navbar-brand"><img alt="Logo" src="logo.png"/></a>
-                    <a class="navbar-brand"><b>QuEST</b> v3.3.0<br>The Quantum Exact Simulation Toolkit</a>
+                    <a class="navbar-brand"><b>QuEST</b> v3.4.0<br>The Quantum Exact Simulation Toolkit</a>
                 </div>
             </div>
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@@ -89,16 +89,16 @@
 <div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160; </div>
 <div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;<span class="preprocessor"># endif // QUEST_DEBUG_H</span></div>
 </div><!-- fragment --></div><!-- contents -->
-<div class="ttc" id="aQuEST__debug_8h_html_a0bef4d330656ba2265569506a0a6400f"><div class="ttname"><a href="QuEST__debug_8h.html#a0bef4d330656ba2265569506a0a6400f">compareStates</a></div><div class="ttdeci">int compareStates(Qureg mq1, Qureg mq2, qreal precision)</div><div class="ttdoc">Return whether two given wavefunctions are equivalent within a given precision Global phase included ...</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01558">QuEST.c:1558</a></div></div>
-<div class="ttc" id="aQuEST__debug_8h_html_a6456bc310db1989c5b17febdb23c2c93"><div class="ttname"><a href="QuEST__debug_8h.html#a6456bc310db1989c5b17febdb23c2c93">initStateFromSingleFile</a></div><div class="ttdeci">void initStateFromSingleFile(Qureg *qureg, char filename[200], QuESTEnv env)</div><div class="ttdoc">Initialises the wavefunction amplitudes according to those specified in a file.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01567">QuEST.c:1567</a></div></div>
-<div class="ttc" id="astructQuESTEnv_html"><div class="ttname"><a href="structQuESTEnv.html">QuESTEnv</a></div><div class="ttdoc">Information about the environment the program is running in.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8h_source.html#l00361">QuEST.h:361</a></div></div>
+<div class="ttc" id="aQuEST__debug_8h_html_a0bef4d330656ba2265569506a0a6400f"><div class="ttname"><a href="QuEST__debug_8h.html#a0bef4d330656ba2265569506a0a6400f">compareStates</a></div><div class="ttdeci">int compareStates(Qureg mq1, Qureg mq2, qreal precision)</div><div class="ttdoc">Return whether two given wavefunctions are equivalent within a given precision Global phase included ...</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01573">QuEST.c:1573</a></div></div>
+<div class="ttc" id="aQuEST__debug_8h_html_a6456bc310db1989c5b17febdb23c2c93"><div class="ttname"><a href="QuEST__debug_8h.html#a6456bc310db1989c5b17febdb23c2c93">initStateFromSingleFile</a></div><div class="ttdeci">void initStateFromSingleFile(Qureg *qureg, char filename[200], QuESTEnv env)</div><div class="ttdoc">Initialises the wavefunction amplitudes according to those specified in a file.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01582">QuEST.c:1582</a></div></div>
+<div class="ttc" id="astructQuESTEnv_html"><div class="ttname"><a href="structQuESTEnv.html">QuESTEnv</a></div><div class="ttdoc">Information about the environment the program is running in.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8h_source.html#l00362">QuEST.h:362</a></div></div>
 <div class="ttc" id="agroup__type_html_ga7740e349b4f8bae6451547680f0ce2d6"><div class="ttname"><a href="group__type.html#ga7740e349b4f8bae6451547680f0ce2d6">qreal</a></div><div class="ttdeci">#define qreal</div></div>
 <div class="ttc" id="aQuEST__debug_8h_html_a2d80643a934235270f5872e90e620ba8"><div class="ttname"><a href="QuEST__debug_8h.html#a2d80643a934235270f5872e90e620ba8">QuESTPrecision</a></div><div class="ttdeci">int QuESTPrecision(void)</div><div class="ttdoc">Return the precision of qreal for use in testing.</div></div>
-<div class="ttc" id="aQuEST__debug_8h_html_a7ba64480d4c3f7b1c3ea90cc0245f3e8"><div class="ttname"><a href="QuEST__debug_8h.html#a7ba64480d4c3f7b1c3ea90cc0245f3e8">initStateOfSingleQubit</a></div><div class="ttdeci">void initStateOfSingleQubit(Qureg *qureg, int qubitId, int outcome)</div><div class="ttdoc">Initialise the state vector of probability amplitudes such that one qubit is set to 'outcome' and all...</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01572">QuEST.c:1572</a></div></div>
+<div class="ttc" id="aQuEST__debug_8h_html_a7ba64480d4c3f7b1c3ea90cc0245f3e8"><div class="ttname"><a href="QuEST__debug_8h.html#a7ba64480d4c3f7b1c3ea90cc0245f3e8">initStateOfSingleQubit</a></div><div class="ttdeci">void initStateOfSingleQubit(Qureg *qureg, int qubitId, int outcome)</div><div class="ttdoc">Initialise the state vector of probability amplitudes such that one qubit is set to 'outcome' and all...</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01587">QuEST.c:1587</a></div></div>
 <div class="ttc" id="astructQureg_html"><div class="ttname"><a href="structQureg.html">Qureg</a></div><div class="ttdoc">Represents a system of qubits.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8h_source.html#l00322">QuEST.h:322</a></div></div>
 <div class="ttc" id="aQuEST__precision_8h_html"><div class="ttname"><a href="QuEST__precision_8h.html">QuEST_precision.h</a></div></div>
 <div class="ttc" id="aQuEST__debug_8h_html_aa1b864a6ae9a703f8bc5f3235f10a630"><div class="ttname"><a href="QuEST__debug_8h.html#aa1b864a6ae9a703f8bc5f3235f10a630">initStateDebug</a></div><div class="ttdeci">void initStateDebug(Qureg qureg)</div><div class="ttdoc">Initialise the state vector of probability amplitudes to an (unphysical) state with each component of...</div></div>
-<div class="ttc" id="aQuEST__debug_8h_html_ae85a2c07d2f1ff2265c4bf22e17653eb"><div class="ttname"><a href="QuEST__debug_8h.html#ae85a2c07d2f1ff2265c4bf22e17653eb">setDensityAmps</a></div><div class="ttdeci">void setDensityAmps(Qureg qureg, qreal *reals, qreal *imags)</div><div class="ttdoc">Set elements in the underlying state vector represenation of a density matrix.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01017">QuEST.c:1017</a></div></div>
+<div class="ttc" id="aQuEST__debug_8h_html_ae85a2c07d2f1ff2265c4bf22e17653eb"><div class="ttname"><a href="QuEST__debug_8h.html#ae85a2c07d2f1ff2265c4bf22e17653eb">setDensityAmps</a></div><div class="ttdeci">void setDensityAmps(Qureg qureg, qreal *reals, qreal *imags)</div><div class="ttdoc">Set elements in the underlying state vector represenation of a density matrix.</div><div class="ttdef"><b>Definition:</b> <a href="QuEST_8c_source.html#l01030">QuEST.c:1030</a></div></div>
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