Transfer classes for eigendata, NEI simulations, and simulation results to this repo

MANIFEST.in

@@ -4,7 +4,7 @@ include setup.cfg
 include LICENSE.md
 include pyproject.toml
 
-recursive-include plasmapy_nei *.pyx *.c *.pxd
+recursive-include plasmapy_nei *.pyx *.c *.pxd *.h5
 recursive-include docs *
 recursive-include licenses *
 recursive-include cextern *

docs/conf.py

@@ -55,7 +55,14 @@
 # -- Options for intersphinx extension ---------------------------------------
 
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {"https://docs.python.org/": None}
+intersphinx_mapping = {
+    "python": ("https://docs.python.org/3", None),
+    "numpy": ("https://docs.scipy.org/doc/numpy", None),
+    "scipy": ("https://docs.scipy.org/doc/scipy/reference/", None),
+    "pandas": ("http://pandas.pydata.org/pandas-docs/stable/", None),
+    "astropy": ("http://docs.astropy.org/en/stable/", None),
+    "plasmapy": ("http://docs.plasmapy.org/en/latest/", None),
+}
 
 # -- Options for HTML output -------------------------------------------------
 

docs/eigen/index.rst

@@ -0,0 +1,10 @@
+.. _eigen:
+
+**********************
+``plasmapy_nei.eigen``
+**********************
+
+.. py:currentmodule:: plasmapy_nei.eigen
+
+.. automodapi:: plasmapy_nei.eigen
+   :no-heading:

docs/index.rst

@@ -28,6 +28,9 @@ The early versions of this package will account for collisional ionization, radi
    :maxdepth: 2
    :caption: Contents:
 
+   ``plasmapy_nei.eigen`` <eigen/index>
+   ``plasmapy_nei.nei`` <nei/index>
+
 Indices and tables
 ==================
 

docs/nei/index.rst

@@ -0,0 +1,10 @@
+.. _nei:
+
+****************
+``plasmapy.nei``
+****************
+
+.. py:currentmodule:: plasmapy_nei.nei
+
+.. automodapi:: plasmapy_nei.nei
+   :no-heading:

plasmapy_nei/__init__.py

@@ -1,18 +1,15 @@
 """A Python package for non-equilibrium ionization modelingg of plasma."""
 
+__all__ = ["eigen", "nei"]
+
 import warnings
 
 try:
     from .version import __version__
 except Exception as exc:
     warnings.warn("Unable to import __version__")
-else:
-    del version
 finally:
     del warnings
 
 from . import eigen
 from . import nei
-
-# Then you can be explicit to control what ends up in the namespace,
-__all__ = ["eigen"]

plasmapy_nei/eigen/__init__.py

@@ -1 +1,3 @@
 """Classes for accessing eigentables for ionization and recombination rates."""
+
+from .eigenclass import EigenData