[Integration Testing] PEcAn Docker Stack Run : Single Site, Single Model #12

	name : Docker Stack Model Test
	on :
	pull_request:

	# allow manual triggering
	workflow_dispatch:

	schedule:
	# run Thursday 4:30 AM UTC
	- cron: '30 4 * * 4'
	jobs:
	sipnet:
	runs-on: ubuntu-latest

	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}

	steps:
	- name: Free Disk Space (Ubuntu)
	uses: jlumbroso/free-disk-space@main
	with:
	tool-cache: false
	android: true
	dotnet: true
	haskell: true
	large-packages: true
	docker-images: false
	swap-storage: true

	- name: Checkout source code
	uses: actions/checkout@v4

	- name: Set up Docker Compose
	run: \|
	sudo apt-get update
	sudo apt-get -y install docker-compose

	- name: Add Volumes to Executor
	run: \|
	cp docker-compose.dev.yml docker-compose.override.yml
	sed -i'' '/R_library/d' docker-compose.override.yml

	- name: Build Containers
	run: \|
	cp docker/env.example .env
	echo "COMPOSE_PROJECT_NAME=pecan" >> .env
	echo "PECAN_VERSION=develop" >> .env
	echo "UID=$(id -u)" >> .env
	echo "GID=$(id -g)" >> .env

	docker compose up --wait -d postgres
	docker run --rm --network pecan_pecan pecan/db:ci
	docker run --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop
	docker image rm pecan/db:ci pecan/data:develop

	- name: Run required containers
	run: \|
	docker compose up --wait -d sipnet executor

	- name: List running containers
	run: \|
	docker ps

	- name: Run SIPNET
	run: \|
	docker compose exec --workdir /pecan/tests executor R CMD ../web/workflow.R --settings docker-ghaction.sipnet.xml

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