Unified preprocessing for masking and parcellating #169

	name: Build and Deploy Sphinx Docs

	on:
	push:
	branches:
	- main
	pull_request:
	branches:
	- '*'


	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	# Step 1: Checkout the repository
	- name: Checkout repository
	uses: actions/checkout@v4

	# Step 2: Set up Python
	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: 3.11

	# Step 3: Install dependencies
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install torch --index-url https://download.pytorch.org/whl/cpu
	pip install -e ".[doc, jax, test]"

	# Step 4: Build Sphinx documentation
	- name: Build Sphinx documentation
	working-directory: doc
	run: \|
	python -m sphinx -b html . _build/html

	# Step 5: Upload Sphinx docs as an artifact
	- name: Upload Sphinx docs artifact
	uses: actions/upload-artifact@v4
	with:
	name: sphinx-docs
	path: doc/_build/html

	deploy:
	# Avoid running this job on a fork
	if: github.repository == 'parietal-INRIA/fmralign' && github.ref == 'refs/heads/main'
	needs: build
	runs-on: ubuntu-latest

	steps:
	# Step 6: Download Sphinx docs artifact
	- name: Download Sphinx docs artifact
	uses: actions/download-artifact@v4
	with:
	name: sphinx-docs
	path: doc/_build/html/
	# Step 7: Deploy to GitHub Pages
	- name: Deploy to GitHub Pages
	uses: peaceiris/actions-gh-pages@v4
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: doc/_build/html

Provide feedback