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Update makeCompatibleWith to use the new AtomCoordMatcher #235

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merged 2 commits into from
Jan 26, 2024

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lohedges
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This PR updates the makeCompatibleWith function to use the new AtomCoordMatcher, which should hopefully fix issues where tLEaP moves a atom between residues. I'd like some time to test this before the next release in case there are some unforeseen consequences of this switch, or edge cases that aren't covered by the existing tests. It might be necessary to use the old match as a starting point, then fall back on this one if it fails.

  • I confirm that I have merged the latest version of devel into this branch before issuing this pull request (e.g. by running git pull origin devel): [y]
  • I confirm that I have added a test for any new functionality in this pull request: [y]
  • I confirm that I have added documentation (e.g. a new tutorial page or detailed guide) for any new functionality in this pull request: [y]
  • I confirm that I have permission to release this code under the GPL3 license: [y]

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@chryswoods

@msuruzhon: Tagging you in since this is relevant to your work.

@lohedges lohedges added enhancement New feature or request exscientia Related to work with Exscientia labels Jan 26, 2024
@lohedges lohedges requested a review from chryswoods January 26, 2024 16:37
@lohedges lohedges temporarily deployed to biosimspace-build January 26, 2024 16:37 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build January 26, 2024 16:37 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build January 26, 2024 16:37 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build January 26, 2024 16:37 — with GitHub Actions Inactive
@lohedges lohedges temporarily deployed to biosimspace-build January 26, 2024 16:37 — with GitHub Actions Inactive
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This looks like it makes things much easer :-)

@lohedges lohedges merged commit dff31eb into devel Jan 26, 2024
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@lohedges lohedges deleted the feature_atomcoordmatcher branch January 26, 2024 17:43
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2 participants