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Bug fix for physics suites using C3 or SAS convection with MYNN PBL scheme #466

Bug fix for physics suites using C3 or SAS convection with MYNN PBL scheme

Bug fix for physics suites using C3 or SAS convection with MYNN PBL scheme #466

Workflow file for this run

# This is a CI workflow for the fv3atm project.
#
# This workflow builds and tests the fv3atm library using GCC, and it tests
# different CMake build options.
#
# Alex Richert, 6 Dec 2023
name: GCC
on:
push:
branches:
- develop
pull_request:
branches:
- develop
jobs:
build_spack:
runs-on: ubuntu-latest
strategy:
matrix:
gcc_ver: ["12"]
mpi: ["mpich", "openmpi"]
steps:
- name: checkout-fv3atm
uses: actions/checkout@v4
with:
path: ${{ github.workspace }}/fv3atm
submodules: recursive
- name: install-cmake
run: |
cd ${{ github.workspace }}
curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx
echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH
- name: cache-spack
id: cache-spack
uses: actions/cache@v4
with:
path: ${{ github.workspace }}/spack-develop
key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }}
# Building dependencies takes 40+ min
- name: spack-install
if: steps.cache-spack.outputs.cache-hit != 'true'
run: |
wget --no-verbose https://github.com/spack/spack/archive/refs/heads/develop.zip
unzip develop.zip -d ${GITHUB_WORKSPACE}/ &> unzip.out
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh
spack env create gcc${{ matrix.gcc_ver }} ${GITHUB_WORKSPACE}/fv3atm/ci/spack.yaml
spack env activate gcc${{ matrix.gcc_ver }}
spack compiler find | grep gcc@${{ matrix.gcc_ver }}
spack external find gmake cmake git git-lfs perl python ${{ matrix.mpi }}
spack config add "packages:all:require:['%gcc@${{ matrix.gcc_ver }}']"
spack config add "packages:mpi:require:'${{ matrix.mpi }}'"
spack concretize |& tee ${SPACK_ENV}/log.concretize
spack install -j2 --fail-fast
echo "spackrc=$?" >> ${GITHUB_ENV}
spack clean --all
build_fv3atm:
needs: build_spack
runs-on: ubuntu-latest
strategy:
matrix:
cmake_opts: ["-D32BIT=ON", "-D32BIT=OFF"]
gcc_ver: ["12"]
mpi: ["mpich", "openmpi"]
steps:
# Only do Doxygen and gcovr build for one job
- name: decide-doc-gcovr-build
run: |
if [[ "${{ matrix.cmake_opts }}" == "-D32BIT=ON" && "${{ matrix.gcc_ver }}" == 12 && "${{ matrix.mpi }}" == mpich ]]; then
echo 'devbuild=ON' | tee -a ${GITHUB_ENV}
echo 'gcov_cmake="-DCMAKE_Fortran_FLAGS=-fprofile-abs-path -fprofile-arcs -ftest-coverage -O0"' | tee -a ${GITHUB_ENV}
else
echo 'devbuild=OFF' | tee -a ${GITHUB_ENV}
fi
- name: install-utilities
run: |
sudo apt-get install doxygen graphviz
python3 -m pip install gcovr
- name: install-cmake
run: |
cd ${{ github.workspace }}
curl -f -s -S -R -L https://github.com/Kitware/CMake/releases/download/v3.29.2/cmake-3.29.2-Linux-x86_64.tar.gz | tar -zx
echo "${{ github.workspace }}/cmake-3.29.2-linux-x86_64/bin" >> $GITHUB_PATH
- name: checkout-fv3atm
uses: actions/checkout@v4
with:
path: ${{ github.workspace }}/fv3atm
submodules: recursive
- name: cache-spack
id: cache-spack
uses: actions/cache/restore@v4
with:
path: ${{ github.workspace }}/spack-develop
key: spack-${{ hashFiles('fv3atm/ci/spack.yaml') }}-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }}
- name: build-fv3atm
run: |
. ${GITHUB_WORKSPACE}/spack-develop/share/spack/setup-env.sh
spack env activate gcc${{ matrix.gcc_ver }}
spack load $(spack find --format "{name}")
cd ${GITHUB_WORKSPACE}/fv3atm
git clone https://github.com/NOAA-EMC/CMakeModules
git clone --recurse-submodules https://github.com/NOAA-PSL/stochastic_physics stochastic_physics_repo
mkdir ${GITHUB_WORKSPACE}/build
cd ${GITHUB_WORKSPACE}/build
export CC=mpicc
export CXX=mpicxx
export FC=mpif90
cmake ${GITHUB_WORKSPACE}/fv3atm -DBUILD_TESTING=ON ${{ matrix.cmake_opts }} -DENABLE_DOCS=ON ${{ env.gcov_cmake }}
make -j2
- name: run-tests
run: |
cd $GITHUB_WORKSPACE/build
ctest -j2 --output-on-failure --rerun-failed
- name: get-test-coverage
if: ${{ env.devbuild == 'ON' }}
run: |
cd $GITHUB_WORKSPACE/build
gcovr -r .. -v --html-details --gcov-executable gcov-12 --exclude $GITHUB_WORKSPACE/fv3atm/tests --exclude $GITHUB_WORKSPACE/fv3atm/stochastic_physics_repo --exclude $GITHUB_WORKSPACE/fv3atm/build/ccpp --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/physics --exclude $GITHUB_WORKSPACE/fv3atm/ccpp/framework --exclude $GITHUB_WORKSPACE/fv3atm/atmos_cubed_sphere --exclude CMakeFiles --print-summary -o test-coverage.html
- name: upload-test-coverage
uses: actions/upload-artifact@v4
if: ${{ env.devbuild == 'ON' }}
with:
name: test-coverage-fv3atm-${{ github.sha }}
path: |
${{ github.workspace }}/build/*.html
${{ github.workspace }}/build/*.css
- name: upload-docs
uses: actions/upload-artifact@v4
if: ${{ env.devbuild == 'ON' }}
with:
name: docs-fv3atm
path: |
build/docs/html
- name: debug-artifacts
uses: actions/upload-artifact@v4
if: ${{ failure() }}
with:
name: ccpp_prebuild_logs-gcc${{ matrix.gcc_ver }}-${{ matrix.mpi }}-${{ matrix.cmake_opts }}
path: ${{ github.workspace }}/build/ccpp/ccpp_prebuild.*