Add tests (#71)

* restructuring docker builds, removing accessibility plugin since it seems to be failing to build for production

* abstracting base url for the api

* correcting URLs

* added jest to package

* increasing log level

* changed direct file paths to assets to import statements

* added env development to dockerignore

* Removed unneccessary comments

* all tests pass, wicked

* adding readme

* add badges to readme and add matrix for os types

* add matrix to dotnet workflow

* doi badge

* remove extra DOI badge

* readme changes

* undoing port changes

* Changed connection to db for tests

* a single test passes

* Added tests for species controller

* codecov uses cobertura

* Add controller tests

* new default guid

* Moved files to Test file

* moved Properties Controller Tests

* add empty files for future tests

* added get user by email and by id

* added time service

* correcting warnings, correcting filename

* trying to forward requests

* things

* adding production database connection

* default database port

* logging connection string

* copying in the production env file

* removing debug statement

* add tests for backend coverage

* update codecov file

* fix npm build -> npm run build

* fix assertion

* added working directory - codecov

* Add tests for GetMethods

* add lcov format for test

* removed context

* Remove coverage gitignore

* changed file names for codecov compatibility

* moved codecoe.yml

* Fix Default branch

* remove upload from npm_build_test.yml

* removed extra coverage files

---------

Co-authored-by: Kyle Shores <[email protected]>
Co-authored-by: JoshHare <[email protected]>
Co-authored-by: JoshHare <[email protected]>
Co-authored-by: BrittExe <[email protected]>
Co-authored-by: oreogunleye24 <[email protected]>

.github/workflows/codecov_workflow.yml

@@ -0,0 +1,81 @@
+name: Codecov Coverage
+
+on:
+  push:
+    branches:
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+
+    steps:
+      # Checkout code
+      - name: Checkout code
+        uses: actions/checkout@v2
+
+      # Setup .NET environment
+      - name: Setup Node.js
+        uses: actions/setup-node@v3
+        with:
+          node-version: 18
+
+      # Restore dependencies
+      - name: Install dependencies
+        run: npm install
+        working-directory: ./frontend
+
+      # Build the project
+      - name: Build
+        run: npm run build
+        working-directory: ./frontend
+
+     # Step 5: Run tests and collect code coverage
+      - name: Test and calculate coverage
+        run: npm run test:coverage
+        working-directory: ./frontend
+
+
+      # Step 6: Upload the code coverage report to Codecov
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v4
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}  # Add the Codecov token in the GitHub secrets
+          files: ./frontend/coverage/lcov.info  # Ensure the correct path for the coverage file
+          flags: vite-tests
+          fail_ci_if_error: true
+    #   # Setup .NET environment
+    #   - name: Setup .NET
+    #     uses: actions/setup-dotnet@v3
+    #     with:
+    #       context: ./backend
+    #       dotnet-version: 6.0.x  # Use the version your project requires
+
+    #   # Restore dependencies
+    #   - name: Restore dependencies
+    #     run: dotnet restore ./backend
+
+    #   # Build the project
+    #   - name: Build
+    #     run: dotnet build ./backend --no-restore
+
+    #  # Step 5: Run tests and collect code coverage
+    #   - name: Test and calculate coverage
+    #     run: |
+    #       dotnet test ./backend --no-build --verbosity normal --logger "console;verbosity=detailed" \
+    #       /p:CollectCoverage=true /p:CoverletOutputFormat=cobertura 
+    #       /p:CoverletOutput=./TestResults/coverage.cobertura.xml
+
+
+    #   # Step 6: Upload the code coverage report to Codecov
+    #   - name: Upload coverage to Codecov
+    #     uses: codecov/codecov-action@v4
+    #     with:
+    #       context: ./backend
+    #       token: ${{ secrets.CODECOV_TOKEN }}  # Add the Codecov token in the GitHub secrets
+    #       files: ./TestResults/coverage.opencover.xml  # Ensure the correct path for the coverage file
+    #       flags: unittests
+    #       fail_ci_if_error: true

.github/workflows/npm_build_test.yml

@@ -57,5 +57,5 @@ jobs:
 
     # Upload coverage to Codecov
 
-    - name: Upload coverage to Codecov
-      uses: codecov/codecov-action@v1
+    # - name: Upload coverage to Codecov
+    #   uses: codecov/codecov-action@v1

.gitignore

@@ -28,4 +28,4 @@ dist-ssr
 *.sw?
 
 node_modules/
-/coverage
+# /coverage

backend/ChemistryCafeAPI.Tests/ChemistryCafeAPI.Tests.csproj

@@ -1,5 +1,4 @@
 <Project Sdk="Microsoft.NET.Sdk">
-
   <PropertyGroup>
     <TargetFramework>net8.0</TargetFramework>
     <IsTestProject>true</IsTestProject>
@@ -70,6 +69,8 @@
     <PackageReference Include="MySqlConnector.DependencyInjection" Version="2.3.5" />
     <PackageReference Include="Pomelo.EntityFrameworkCore.MySql" Version="8.0.2" />
     <PackageReference Include="Swashbuckle.AspNetCore" Version="6.5.0" />
+    <PackageReference Include="Microsoft.Testing.Extensions.CodeCoverage"
+                      Version="17.10.1" />
   </ItemGroup>
   <PropertyGroup>
     <DebugType>portable</DebugType>

backend/ChemistryCafeAPI.csproj

@@ -48,6 +48,8 @@
     <PackageReference Include="MySqlConnector.DependencyInjection" Version="2.3.5" />
     <PackageReference Include="Pomelo.EntityFrameworkCore.MySql" Version="8.0.2" />
     <PackageReference Include="Swashbuckle.AspNetCore" Version="6.5.0" />
+    <PackageReference Include="Microsoft.Testing.Extensions.CodeCoverage"
+                      Version="17.10.1" />
   </ItemGroup>
 
 </Project>

codecov.yml

@@ -0,0 +1,4 @@
+codecov:
+  max_report_age: off
+codecov:
+  branch: AddTests # set new Default branch

frontend/.gitignore

@@ -24,4 +24,4 @@ dist-ssr
 *.sw?
 
 node_modules/
-/coverage
+# /coverage