fix typo

MannLabs · Jun 5, 2024 · b00b7fc · b00b7fc
1 parent d293909
commit b00b7fc
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/sparcscore/pipeline/segmentation.py b/src/sparcscore/pipeline/segmentation.py
@@ -280,7 +280,7 @@ def save_segmentation_zarr(self, labels=None):
                 loc = parse_url(path, mode="w").store
                 group = zarr.group(store=loc)
 
-                segmentation_names = ["nucleus", "cyotosol"]
+                segmentation_names = ["nucleus", "cytosol"]
 
                 # check if segmentation names already exist if so delete
                 for seg_names in segmentation_names:

diff --git a/src/sparcscore/pipeline/workflows.py b/src/sparcscore/pipeline/workflows.py
@@ -1071,7 +1071,7 @@ def _get_downsampling_parameters(self):
         return N, smoothing_kernel_size
 
     def _finalize_segmentation_results(self, size_padding):
-        # nuclear and cyotosolic channels are required (used for segmentation)
+        # nuclear and cytosolic channels are required (used for segmentation)
         required_maps = [self.maps["normalized"][0], self.maps["normalized"][1]]
 
         # Feature maps are all further channel which contain additional phenotypes e.g. for classification